Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02449 ATGGAATGGGCTACAGGAAGTTTCAGACCATTCGTTTCTCGAGCTCCCGAATCTTCGTTTGGGTTTCTTTATAACTATAATCTTGAACAATTTCAGGTTTCAGGCGTAGATGTGAAGCATTCGGCGATGGCGGGGGCATCGGAGACAGTGCTGCAAGGGTTGGTTCCAGGGATGGATATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTTGAGTCACTCGAACGAAGCTTCCAGGAGGAGATCAAGCTTGATCCCGACCGGAAACAGAAGCTGTCAAAGGAACTCGGTCTGCAGCCTCGTCAGATCGCTGTTTGGTTTCAGAACCGTCGTGCGAGGTGGAAGGCAAAGCAACTCGAGCATCTCTATGATACTCTCAAACAGGAGTTTGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAAGAGGTAATGAAGCTGAAGAGCATGCTGAGAGAGCTTCAAGCTGCAAGGAACCAAGTGTCAACGGTGTACACCGACTTGTCGGGCGAGGAGACAGTGGAAAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCTAGACCAGTAGCTGCAGCAGCAGCCGTGGCAGCAGCAAATCACTACACGACGCCACCAGAGCAATGCAACTATGTGTTTAACACTGAGGAGTACAACCCTATGTCTCCAGCTTTCTGGGGCTCTCTCCCATCCTCTTACCATCCCCAGTAG 729 50.89 MEWATGSFRPFVSRAPESSFGFLYNYNLEQFQVSGVDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKPRPVAAAAAVAAANHYTTPPEQCNYVFNTEEYNPMSPAFWGSLPSSYHPQ 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31086629 31089820 + MELO3C009420.2.1 Cme04g02449 326710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02449 242 CDD homeodomain 68 124 IPR001356 GO:0003677
Cme04g02449 242 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Cme04g02449 242 Pfam Homeobox associated leucine zipper 123 157 IPR003106 GO:0006355|GO:0043565
Cme04g02449 242 Gene3D - 67 127 - -
Cme04g02449 242 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Cme04g02449 242 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Cme04g02449 242 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Cme04g02449 242 Coils Coil 63 83 - -
Cme04g02449 242 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Cme04g02449 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 202 IPR045224 GO:0003700
Cme04g02449 242 Coils Coil 115 166 - -
Cme04g02449 242 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Cme04g02449 242 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 202 - -
Cme04g02449 242 SMART HOX_1 65 127 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02449 Cme08g01238 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02449 Cme-Chr4:31086629 Cme09g00288 Cme-Chr9:2286250 1.33E-28 dispersed
Cme04g02449 Cme-Chr4:31086629 Cme08g01238 Cme-Chr8:8830220 1.44E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41275 PF00046 Homeodomain 1.90E-17 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02449 - - csv:101221983 452.981