Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02450 ATGACCCAATATTTGGGATTGGCATCTGTTGGGGGTTTAGTAATCTGGTTGGAAGGAATTAGTCACAGGGCTGGTAATTTAATTAACGGGGAAGATGTAGATGTAAAGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATTAGATTCGTCAGGGCTGATTCTCAGGTGTTTCTCTTTGCCAACTCGAAATGCAAGAGGTATTTCCACAACCGGTTGAAGCCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTACCACCAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTACGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACTAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGCAACGTTGCCAAGGGGCCTGCATCCAAGGGTCCAAAGCTCGGCGGTGGTGGTGGGAAGCGTTGA 591 47.88 MTQYLGLASVGGLVIWLEGISHRAGNLINGEDVDVKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31091627 31093986 - MELO3C009419.2.1 Cme04g02450 326711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02450 196 Coils Coil 144 168 - -
Cme04g02450 196 CDD Ribosomal_L24e_L24 35 88 IPR000988 -
Cme04g02450 196 ProSitePatterns Ribosomal protein L24e signature. 42 59 IPR023442 -
Cme04g02450 196 PANTHER 60S RIBOSOMAL PROTEIN L24 29 196 IPR000988 -
Cme04g02450 196 Gene3D Ribosomal protein L24e 35 96 IPR038630 -
Cme04g02450 196 SMART 4TRASH 40 78 IPR011017 -
Cme04g02450 196 MobiDBLite consensus disorder prediction 151 196 - -
Cme04g02450 196 Gene3D - 101 170 - -
Cme04g02450 196 PANTHER 60S RIBOSOMAL PROTEIN L24 29 196 - -
Cme04g02450 196 Pfam Ribosomal protein L24e 36 99 IPR000988 -
Cme04g02450 196 MobiDBLite consensus disorder prediction 151 168 - -
Cme04g02450 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 38 90 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02450 Cme08g01239 CCT
Cme04g02450 Cme08g01239 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01204 Cme-Chr3:21566244 Cme04g02450 Cme-Chr4:31091627 8.39E-18 transposed
Cme04g00567 Cme-Chr4:5104708 Cme04g02450 Cme-Chr4:31091627 7.96E-18 transposed
Cme04g02450 Cme-Chr4:31091627 Cme08g01239 Cme-Chr8:8836752 3.22E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02450 K02896 - csv:101206122 251.136