Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02451 ATGGCTTCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGTGGCGGCGAGGGTTGCTGCTTCCGATCTGAGAGACATTAACAGAGAGGAAGAGCGGCAGGCAGCGGCGGCGCCGCAAAAGACAGAGAAGAATGCCACGGTGGAGGTTTTCGAGGCGGACCGAGAACAGCAACAGAGGCCTGGCGTGATTGGGTCAGTACTGAGGGCGGTGCATGACACATATGAACATGCTAAGGAAGCGGTGGTCGGAAAAAGCCATGAAGCGGAGGAGCGAAACCGAGAAACGAAGGATTGGTCGGCGGAGAAGGCAAAAGAGACCACCGAGGAGGCAGGGAGGAAAATGGACGAGTACGGAAGTGCTGTTGGGAGTAAGGCAAGGGAGACGAAGGAAGCTGCCGAAGAGAGAGCGGCGGCGGCAAGAGGGAAGATGAGTGAGTATGAAGAGAAAACAATGGATAAAACCAGCGAATATAAGGATGCAGCGGCGAGAAAAGCAGAGGAATACAAAGATTACACGGCGGAGAAAACAGCGGAGGCTAAAGGAAAGGCCAGCGAATACAAGGATTCTGCAGCGGAGAAGGCGAGGGAAGCGAAGGATGCAGCGGCGAGAAAAGCGGTGGAATATAAGGACTACACTGCAGAGAAGGCGGCGGAGGCTACAGGCGCCGCTAAAGGAAAGGCCAGTGAGTATACGAATGCTGCAGCGGAGAAGGCGAGGGAAACTAAGGATGCTGCAGCGGAGAAGGCGAGGGAAGCTAAGGATGCTGCAGCGAGAAAAGCAGGGGAATACAGAGATTACACAGCTGAGAAGGCGAGGGGAGCAACGGAAACGGTAAAGGAGAAGGCTGGTGAGTACAAGGATTATGCAGCGGAGAAGGCAAATCAAGCAAAGGAGAAGGCGGCGGAGTATAAGGATTATACAGTGGATAAGGCGAAGGAGACGACGGATGCGGCGGCAAGAAAAACAGGAGAGTATAAAGACTATGCAGCGGAGAAAGCGAGGGAGACGACAGATTACACGGCGGATAAGGCGAAAGAAGGGAAGGACACGACGGTGAGCAAACTTGGGGAACTGAAAGATTCAGCAGCGGATGCTGCAAAGAGAGCAATGGAATACTTTACTGGAAAGAAAGAGGAAGTCAAGGAGAAAGCATACGAAACAAAAGATGTCGCTAAGGAATGGCAGGAAAAGATGGGGGAATCAGAGGACGATACAAGAAGGAAAATGGAGGATTTAAGGCTGCAGGGAGAAGGAAGGAGGGGCAGCACTGAAGCAGCAAAAGTCACACTTGAACATAACAGAGGCCGTGGCGGGGAGGGAGAGGTGGTGGTAGGTTTGGAGGAGACACGACCGGGTGCGCTGGCCTCGACTTTGAAGCAGGCAGACGACATGGCGGGACAGTCGTTTAACGATGTGGGTCGAATGGATGAGGAGGGAGTTGTGCGCTCAAAGGATCGTCAAGGCAAGATAAGGTCACGGTTGTTGCTTTGCTTATTTTGGACCTCCTTTGGTTCTCCTTTGTCTAAGAACTCTGGTGCTGCATCGAAGACTAGCAACACGATGGTGCTCGTTATTGAGGCTCCCATTGGTGGAGTTGGACGAAATATGGGTCTTTGA 1617 52.69 MASSKEMKKERAEVAARVAASDLRDINREEERQAAAAPQKTEKNATVEVFEADREQQQRPGVIGSVLRAVHDTYEHAKEAVVGKSHEAEERNRETKDWSAEKAKETTEEAGRKMDEYGSAVGSKARETKEAAEERAAAARGKMSEYEEKTMDKTSEYKDAAARKAEEYKDYTAEKTAEAKGKASEYKDSAAEKAREAKDAAARKAVEYKDYTAEKAAEATGAAKGKASEYTNAAAEKARETKDAAAEKAREAKDAAARKAGEYRDYTAEKARGATETVKEKAGEYKDYAAEKANQAKEKAAEYKDYTVDKAKETTDAAARKTGEYKDYAAEKARETTDYTADKAKEGKDTTVSKLGELKDSAADAAKRAMEYFTGKKEEVKEKAYETKDVAKEWQEKMGESEDDTRRKMEDLRLQGEGRRGSTEAAKVTLEHNRGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKIRSRLLLCLFWTSFGSPLSKNSGAASKTSNTMVLVIEAPIGGVGRNMGL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31095975 31098317 - MELO3C009418.2.1 Cme04g02451 326712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02451 538 MobiDBLite consensus disorder prediction 22 37 - -
Cme04g02451 538 PANTHER DAUER UP-REGULATED-RELATED 247 334 - -
Cme04g02451 538 MobiDBLite consensus disorder prediction 217 260 - -
Cme04g02451 538 Coils Coil 235 255 - -
Cme04g02451 538 MobiDBLite consensus disorder prediction 22 47 - -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 337 376 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 187 230 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 179 208 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 304 336 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 222 263 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 265 302 IPR004238 -
Cme04g02451 538 Pfam Late embryogenesis abundant protein 148 185 IPR004238 -
Cme04g02451 538 MobiDBLite consensus disorder prediction 79 152 - -
Cme04g02451 538 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 247 334 - -
Cme04g02451 538 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 296 480 - -
Cme04g02451 538 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 260 - -
Cme04g02451 538 MobiDBLite consensus disorder prediction 233 260 - -
Cme04g02451 538 PANTHER DAUER UP-REGULATED-RELATED 296 480 - -
Cme04g02451 538 PANTHER DAUER UP-REGULATED-RELATED 1 260 - -
Cme04g02451 538 MobiDBLite consensus disorder prediction 165 203 - -
Cme04g02451 538 Gene3D - 314 384 - -
Cme04g02451 538 Gene3D - 186 232 - -
Cme04g02451 538 Gene3D - 134 185 - -
Cme04g02451 538 Gene3D - 262 313 - -
Cme04g02451 538 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02451 - - - cmo:103486554 796.578
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1071 . . . . . . . . . Cmo14g00246 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1225 Cone19ag1211 . . . Cme04g02451 . . Bda03g01693 . . . . . . . . . Cma14g00255 . Car14g00233 Cpe03g00222 . Bhi11g02005 Tan08g1798 . . Hepe05g0322 . . Cla10g01859 Cam10g1914 Cec10g1969 Cco10g1942 Clacu10g1931 Cmu10g2675 Cre10g2063 Lsi03g01955 Csa03g03358 Chy04g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007741 1 4 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02451 Cme_Chr04 FPKM 16.72563 19.060598 13.799757 12.808331 22.431759 17.396946 19.575266 13.902233 13.226139 14.181048