Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02452 ATGTTCCTGACGAGATATTCTCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGGCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGCGACCAAGATAGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGATTTATTGAACAATCATTCTGGTGCACGGGGCGGCACATTCATTTCCTGTAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCTTTTCTGAAACGACCGCAAAATATCAAGACCAAAGATATAGATTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATCAATTCTAATGACTTGACATGGCATAATCAATTTTCTTGTCAAGAATCAAAGAACAACTTCTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATGTGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTTGACAAGTTGCAAGTGAAGGAGCAAGAAATTATTGTTACAACCTCTTTGGCCATGCGCCTTGTAGTTGTCTTAACCGATCATCATGGGTGGAAGAAGGCTAATGAAAGTAGTCAGGCTGTTGCTGATGCAGCATTGGAGGATTTAATTCATTATCTGGGAACTTCTGAAAGTGGTCTTTACATTTCAGTCAGGCAATACATGTATAAATGGAGTGTCCTCCACTCCACGCAAAGTAACAGTACCATCAAGGCAAATGATTTATTAGTTATTACTGTGAGTGCTATAACTTTAGCATTACGACCATTTCATTTAATGATTTCCGATACGATTGGTACTACTCCGTGGGAAGGGCATCATGTTGCCGAACAGTTTTGCCTGTTTCTGCTTACAATTCCTGGGTTTATTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGTTACCATGCTTCTTGACTCTATTGGCCGAGAAAGAGACAATTTTGCTGGGAATGTCTAATTTGAATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCAGGGAGTGAAACTAAGGCAAGGGATTCTGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTGTATGTTCGTGTGGTCGTTACTTTGGCAGAAAGCTTTTTGAATTTGAGTGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCAGAGTGACAATGTAACTTCTTATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAAGGACATCTATGTCCTTGAGCACATCTTTCATTGATATGTTTAGGCCTGTTTGTGATCAGAGGCATCTCACAGATCTTTTGAAAGTAGTAAATACAGATGTTTCTTCTGATAAAAGCACTGCGCAATCAAATGCTATGGAATGTATGAAAAGCTTGAAACTGCTTGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTTTTGAATCCATTGGTTGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAGTGATGTTGATGAAGCTGAAGGTCACTTTCCTGGCTCAAGTAAAATATCATGTAAAGGAAAAAATGAAGGTTCTGGCAAAAAGCAAAGTCAAATCAGTAAGGATGGAAGTAGTAGGTGGGTTCCATTCAGGCTGGAGCAGCAAAGAAAACTTGCTTCAATGCTTAACACGCTTGTGTATAATGGCTTGTCCCACGGTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCCTGCATTTGATGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTAGGCTATGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGCCAACTTAGGGGCAGATGATACTTCATCAGTTCCAAGTGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTCAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGTTCACGATCATTTGAAATTGTAATTCGTCGTAGCCATGTTGTTGAAGATGGATTCAGACAGTTAAATTCTCTTGGGTCAAGGCTGAAATCAGCTATCCATGTTTCATTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTGTCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCGCCCGAATATGGACTGTTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCAAATGGATCTGCACGATATCTCGATAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTTTATGAAGGAATATTGCTTGACTATTCATTTTCACACGTTTTTGTCCATAAGCTATTAGGGCGGTATAGCTTCCTTGATGAGCTATCAACGCTTGATCCTGAGCTCTACAGGAATCTCATGTATGTCAAGTCTTATGAGGGTGACGTCAAAGAACTCTCGTTGGATTTCACTGTAACTGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCATGCTATTGCTGATTATAAACTTAATCGACAGATATTGCCTTTCTCAAATGCGTTTTATAGAGGTTTAACTGATCTTATATCATCGTCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGAGGAAACCATGATATTGACGTCAATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTTTGGGAGGTCATTAAAGGATTTGAACCAAAAGATCGATGCTTGCTTCTTAAATTTGTCACCAGTTGTTCTCGAGCTCCATTACTTGGATTCAAATACCTGCAACCAGCTTTTACCATTCATAAGGTTTCGTGTGACGTACCTATTTGGGCTTCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGCTTCCTACGTACAAACGTTCAAGTACTTTGAGATCAAAACTTCTCTACGCAATCAATTCCAACTCAGGATTCGAACTTTCTTAA 3300 40.27 MFLTRYSQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWRRFRATKIAALQLQEEWEDLLNNHSGARGGTFISCNILRPFLFFISSFLKRPQNIKTKDIDCMKNCFKILFESINSNDLTWHNQFSCQESKNNFCSLATGTSEERRMWTYQSRKLISVCLFILVHFDKLQVKEQEIIVTTSLAMRLVVVLTDHHGWKKANESSQAVADAALEDLIHYLGTSESGLYISVRQYMYKWSVLHSTQSNSTIKANDLLVITVSAITLALRPFHLMISDTIGTTPWEGHHVAEQFCLFLLTIPGFIQNLPQVLVPAVKHRSILLPCFLTLLAEKETILLGMSNLNQLSVECGSKVVPAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVRVVVTLAESFLNLSGDLGCGKKENQDIQSDNVTSYEPSDAAVLKNERTSMSLSTSFIDMFRPVCDQRHLTDLLKVVNTDVSSDKSTAQSNAMECMKSLKLLDISYFYMYMLRIFSFLNPLVGSLPILNMLSFTPGFLVDLWGVLESSLFPSDVDEAEGHFPGSSKISCKGKNEGSGKKQSQISKDGSSRWVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLMYERDCRHQFCPPRLWLSPARTSRPPVAVAARTHEALSANLGADDTSSVPSVGSIITTTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVIRRSHVVEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNGSARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLISSSWLKLFNASEFNQLLSGGNHDIDVNDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASIGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31100724 31111543 + MELO3C009417.2.1 Cme04g02452 326713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02452 1099 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1099 - -
Cme04g02452 1099 MobiDBLite consensus disorder prediction 568 587 - -
Cme04g02452 1099 Gene3D Hect, E3 ligase catalytic domain 857 936 - -
Cme04g02452 1099 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 5 1099 IPR044611 GO:0000209|GO:0061630
Cme04g02452 1099 Gene3D Hect, E3 ligase catalytic domain 974 1098 - -
Cme04g02452 1099 Gene3D Hect, E3 ligase catalytic domains 733 971 - -
Cme04g02452 1099 Pfam HECT-domain (ubiquitin-transferase) 786 1099 IPR000569 GO:0004842
Cme04g02452 1099 ProSiteProfiles HECT domain profile. 755 1099 IPR000569 GO:0004842
Cme04g02452 1099 SMART hect_3 749 1099 IPR000569 GO:0004842
Cme04g02452 1099 SUPERFAMILY Hect, E3 ligase catalytic domain 730 1092 IPR035983 GO:0004842
Cme04g02452 1099 CDD HECTc 731 1097 IPR000569 GO:0004842
Cme04g02452 1099 MobiDBLite consensus disorder prediction 560 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02452 Cme-Chr4:31100724 Cme11g02100 Cme-Chr11:28635377 4.40E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02452 K10588 - zju:107432043 1390.17