Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02454 | ATGGAGCTTTCTCTTCTCCTTCCTTCCTACAGACAAAACCCCACTATTTTCCACAAGCCCCTCAACCCCTTCGCCGTTATCGGGAAGAGGCGGCCATCTCTTTTCCCTTGTCGCTGCTCCTTATCGTCTTCACAAGAGGAATCTTCAGAACAAGCTAAAGAATCGCTGCAGTGTGAGGGAAGAAGGGCATTGATTGGTTCTTTCCTGTCGACGGCTACTGGCATATATTTCTGCAATGTAGCCGAGGCTGTTAGCACAAGTAGAAGGGCTTTGAGAGCATCAAAAATACCTGAAAGTGAGTTTACAACTCTCCCGAATGGTCTGAAGTACTATGACGTGAAGGTTGGAGGAGGAACTAAGGCTGTGGTTGGATCCCGTGTTGCAGTTCACTATGTGGCTAAATGGAGAGGGATCACCTTTATGACAAGTAGACAGGGGCTTGGTGTTGGTGGAGGAACGCCTTACGGATTTGATGTAGGGCAATCAGAAAGAGGAACAGTTCTCAAGGGGTTGGATCTAGGTGTTCAAGGCATGAGGGTAGGAGGCCAGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTACGGAAGCAAAGGGGTTCAAGAAATTCCTCCAAATGCAACAATAGAGTTGGATGTGGAATTGCTATCCATCAAGCAAAGTCCATTTGGAACTCCAGTAAAAATTGTTGAAGGTTAA | 696 | 46.55 | MELSLLLPSYRQNPTIFHKPLNPFAVIGKRRPSLFPCRCSLSSSQEESSEQAKESLQCEGRRALIGSFLSTATGIYFCNVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGTKAVVGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIELDVELLSIKQSPFGTPVKIVEG | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31115212 | 31119676 | + | MELO3C009415.2.1 | Cme04g02454 | 326715 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02454 | 231 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 124 | 218 | IPR001179 | GO:0003755 | |
| Cme04g02454 | 231 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC | 25 | 231 | - | - | |
| Cme04g02454 | 231 | SUPERFAMILY | FKBP-like | 77 | 218 | - | - | |
| Cme04g02454 | 231 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 25 | 231 | - | - | |
| Cme04g02454 | 231 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 119 | 215 | IPR001179 | GO:0003755 | |
| Cme04g02454 | 231 | Gene3D | - | 45 | 222 | IPR046357 | GO:0003755 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02454 | Cme-Chr4:31115212 | Cme07g00037 | Cme-Chr7:240710 | 2.17E-23 | dispersed | |
| Cme12g01836 | Cme-Chr12:24731067 | Cme04g02454 | Cme-Chr4:31115212 | 1.21E-07 | dispersed | |
| Cme04g02454 | Cme-Chr4:31115212 | Cme06g00920 | Cme-Chr6:6446666 | 5.29E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02454 | - | - | csv:101205652 | 432.95 |