Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02455 ATGGTAACTATGAAGATCCCAACACTAGGCTTGTGTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCACTTCTGCGATTCACAAAAAACCTGCCCAAGGTGTGGCTCTTTTGAAGTTCCTTACCCTCTAAGTACCAATCCCAACTGTGGTAACTTAGATTATGCTCTTCGTTGTGATTCTCATTCAAAAAAACTCTACTTTGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAATGCTTCAAGTCAACGTATGGTCATCCAACCATCTCCGTGGGTTGCTGGCTCCTGTGTTACTCAAGACATGTTGGTTGGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAACACAATTTTCCTCTTGAACTGTTCTCCTCGCCTGCTAGTCTCGCCGCTCAATTGCACTCCTTCAAGTCTCTGTCACCACTACTTGGCAAATTCAGGACGAGTCGATGGAGAAAGAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGCTGTACCTTCATCGCTGGTGGGATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGTTGTAGAGCATTCAGGAGTATCCTTCATCTGGATGTAGAAAAGCCACCAAACCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTACTCCGCCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCGTCAGATTGTCTCCCTACTGGTGGTTCCAACAACCGTTCTCGCTGCCTTTGCAGAATGAACTATTATTGGGATCATAATCTTGGAACATGCCTGAGAACCAATAAGAAGAGTTTGGTTAGACTCAGCATAAAGCTCTCGGTATGTTTGGTTTCCTTTTTCGTTCTAGCTGCGGTCATTGCTCTTATTACAGTCAGGAAGTCCAAAACTTTCAGTAAACAGGAAAAACTATATAAAGAAAGAGAAGAAAAGTTGAATCTAAGCCATGGTGGCAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAATCCTAGGCAGTGGTGGCTTTGGAGAGGTTTACAAAGGTGAGCTTCAAGATGGGACTGTCGTAGCCGTGAAGTCGGCTAAAGTGGGTAATCTAAAGAGCACTGAACAAATACTCAATGAAGTCGGAATACTATCTCAAGTAAATCACAGGAATCTTGTGAAACTTATAGGTTGTTGTGTAGAAACTGAGCAACCATTGATGGTATATGAATACATTTCCAATGGTACCCTCCATGACCATTTACATGGCAAGGTTCCTACTTTCTTGGATTGGAGAAAAAGGCTAAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCGACAAATATTCTTTTAGATGATAACTTCAATGCCAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCACGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCGGAATACTATCGAAATTACCAGTTAACAGATAAAAGTGATGTGTATAGCTTTGGAGTTGTCCTCCTCGAGCTTTTAACCTCTAAGAAGGCCATAGATTTCACAAGAGATGAAGATGGTGTCAATCTAGCAATATATGTGATCCAACAAGTGCAAAATGGTGCATGCATTGACGCCATCGATAAACAACTTATCAGTGACAATCCGTCCAGCAATATACTGATCAGTGTAAAACATTTCATGGAGCTCGCACTCTCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTGCATGAAAGATGTACTCCAAGAACTCGAATACATAACTCAAACATTGGAAAATCCAGAAACAATTGCTGAAGAAGGTAATTCTTAA 1917 41.52 MVTMKIPTLGLCGSYLFFLLFFSHFCDSQKTCPRCGSFEVPYPLSTNPNCGNLDYALRCDSHSKKLYFDALNGSSYPILKINASSQRMVIQPSPWVAGSCVTQDMLVGEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLANSGRVDGERAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRAFRSILHLDVEKPPNQWEEGLEIQWATPPEPICRTQSDCTGASDCLPTGGSNNRSRCLCRMNYYWDHNLGTCLRTNKKSLVRLSIKLSVCLVSFFVLAAVIALITVRKSKTFSKQEKLYKEREEKLNLSHGGRPARMFHLKEMKKATNEFSKDRILGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMVYEYISNGTLHDHLHGKVPTFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSKKAIDFTRDEDGVNLAIYVIQQVQNGACIDAIDKQLISDNPSSNILISVKHFMELALSCLREKKVERPCMKDVLQELEYITQTLENPETIAEEGNS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31119687 31123662 + MELO3C009414.2.1 Cme04g02455 326716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02455 638 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02455 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
Cme04g02455 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 632 - -
Cme04g02455 638 Gene3D Transferase(Phosphotransferase) domain 1 422 636 - -
Cme04g02455 638 Gene3D Phosphorylase Kinase; domain 1 315 421 - -
Cme04g02455 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247
Cme04g02455 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02455 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cme04g02455 638 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 632 IPR045274 GO:0007166
Cme04g02455 638 CDD STKc_IRAK 352 620 - -
Cme04g02455 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cme04g02455 638 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02455 Cme-Chr4:31119687 Cme08g02430 Cme-Chr8:31201131 0 dispersed
Cme08g00521 Cme-Chr8:3232224 Cme04g02455 Cme-Chr4:31119687 2.37E-88 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64845 PF07714 PK_Tyr_Ser-Thr 2.90E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02455 - - csv:101221284 1255.74