Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02457 CTCTCCAAATCGTACTCTCTCTTCTCTTTTTTTTTTTTCTTCCTTCCCTTCTCTCCAATCCCCCGTTCTAGAAACCGAAATTCAATATTCTTTTTCTTCTTTCTCTCTCTCTCTCTCACTCTCTCCATTTATTCCATAATAACAACCACAGATTCCAAAGAAAACCGTCACCAGCATTACTCAGGTGTTTGTGTGATTTCCATTTCAATGGCAACTGTTTCTCAGCCTACGGCTCATGCCTCTCCGGCTTCCCTCTACGTTGGCGACCTTCATCCTGATGTTACTGATGGACAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTTGCCTCTGTTCGTATATGTAGAGATTCCTCCACTGGACGCTCTCTCTCTTATGGCTATGTCAATTTCATTTCTCCTCAAGATGAGATATTAAATGACGATCGTTTAATAAAAGACTATATGAGTTGGATTCGTTGGGATTCCGATGAATTTATTAAAAGAATGTTTGCTGATCACGCAACCAATGCCATAGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCAATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCACGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGAATCTGCAAATGCTGCTATAGAGTCACTGAATGGCTTTACCGTTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAAAGTGATCGAGTTTTGGCCAATCCTGATATTAAATATACCAATTTGTACGTGAAGAATCTTGACCCAGAGATTGGGGAAGAGCATTTGCAGGAGAAGTTCTCCGAGTTTGGAAAAATTTCCAGCATGATTATTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATCAACTTTGAAAACTCTGATGATGCCAAACGGGCATTGGAAACGCTTAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCAAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGGTGTTACTGATGAAGAACTAAGAGAGCGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTTTCCAACCCTGATGAAGCTAAAAGAGCTGTGAACACTTTGCAAGGATGCATGTTTCACGGGAAGCCACTCTATTTGGCAATTGCACAAAGAAAAGAGGATAGGCAAATGCAATTGAAGCTTCAGTTTGCGCAACGGCTGGCAGGGATACCAGGACCGTCGACTACAATTTTTCCTGGTGGTTACCCACCTTATTACTACCCAGCACCTGGTGTTGTTCCACCAGTAGCATCTCGTCCAGGTCTAATGTTTCAGCCTTTAGGTATGAGGCCTGGATGGAGAGCCAACACTTATACATCTCCTGTAAGACCTGGCTTTCAACCTTCACCACTACCTATTATACCGACTGCTTCGAGGCAACCCAGACAAAACAGAGGCAAAATGAATGGACCAATGCTTTCTCATCAGAATGGAATCCAATCTGTCTCATATATGCAAAATTCACAAGATGCCAATCAGTCAGTAGTTACTGCAAAATCATCCGGCAATCAGCAGTGGACCGGACAGGTTAAGTATGTCCCAAATGCTCGCTCATGTGAAACGAACAAAGCTTCTGGAGCCTCAGCTGCTGCTGCTTTTAATTCTGTTGGAGATATCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCTTGGTCCAAAAACGCAAGCCGGAGCTTGCTGCGAAAATTACGGGTATGCTTCTGGAGATGGACAACTCGGAATTGCTACTGCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAG 2142 42.95 LSKSYSLFSFFFFFLPFSPIPRSRNRNSIFFFFFLSLSLTLSIYSIITTTDSKENRHQHYSGVCVISISMATVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDEILNDDRLIKDYMSWIRWDSDEFIKRMFADHATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLHELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDGVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLGMRPGWRANTYTSPVRPGFQPSPLPIIPTASRQPRQNRGKMNGPMLSHQNGIQSVSYMQNSQDANQSVVTAKSSGNQQWTGQVKYVPNARSCETNKASGASAAAAFNSVGDISQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPELAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQ 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31131751 31135949 - MELO3C009412.2.1 Cme04g02457 326718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02457 714 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 166 713 IPR006515 GO:0003723
Cme04g02457 714 PANTHER POLYADENYLATE-BINDING PROTEIN 636 713 - -
Cme04g02457 714 PANTHER POLYADENYLATE-BINDING PROTEIN 77 136 - -
Cme04g02457 714 SMART rrm1_1 203 275 IPR000504 GO:0003723
Cme04g02457 714 SMART rrm1_1 84 153 IPR000504 GO:0003723
Cme04g02457 714 SMART rrm1_1 294 366 IPR000504 GO:0003723
Cme04g02457 714 SMART rrm1_1 397 469 IPR000504 GO:0003723
Cme04g02457 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 135 IPR000504 GO:0003723
Cme04g02457 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 466 IPR000504 GO:0003723
Cme04g02457 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Cme04g02457 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Cme04g02457 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 192 IPR000504 GO:0003723
Cme04g02457 714 CDD RRM2_I_PABPs 200 276 IPR045305 -
Cme04g02457 714 SUPERFAMILY PABC (PABP) domain 641 713 IPR036053 GO:0003723
Cme04g02457 714 Gene3D - 278 379 IPR012677 -
Cme04g02457 714 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 644 714 IPR002004 GO:0003723
Cme04g02457 714 CDD RRM1_I_PABPs 84 193 - -
Cme04g02457 714 PANTHER RNA BINDING PROTEIN 77 136 - -
Cme04g02457 714 PANTHER RNA BINDING PROTEIN 164 630 - -
Cme04g02457 714 CDD RRM4_I_PABPs 395 473 - -
Cme04g02457 714 SUPERFAMILY RNA-binding domain, RBD 285 380 IPR035979 GO:0003676
Cme04g02457 714 Gene3D - 641 714 - -
Cme04g02457 714 Gene3D - 380 483 IPR012677 -
Cme04g02457 714 SUPERFAMILY RNA-binding domain, RBD 83 192 IPR035979 GO:0003676
Cme04g02457 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Cme04g02457 714 Pfam Poly-adenylate binding protein, unique domain 651 714 IPR002004 GO:0003723
Cme04g02457 714 Gene3D - 202 275 IPR012677 -
Cme04g02457 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Cme04g02457 714 PANTHER POLYADENYLATE-BINDING PROTEIN 164 630 - -
Cme04g02457 714 PANTHER RNA BINDING PROTEIN 636 713 - -
Cme04g02457 714 Gene3D - 68 201 IPR012677 -
Cme04g02457 714 Coils Coil 365 385 - -
Cme04g02457 714 SMART rrm2_1 397 469 IPR003954 GO:0003676
Cme04g02457 714 SMART rrm2_1 294 366 IPR003954 GO:0003676
Cme04g02457 714 SMART rrm2_1 203 275 IPR003954 GO:0003676
Cme04g02457 714 SMART poly_2 656 714 IPR002004 GO:0003723
Cme04g02457 714 SUPERFAMILY RNA-binding domain, RBD 394 487 IPR035979 GO:0003676
Cme04g02457 714 SUPERFAMILY RNA-binding domain, RBD 166 281 IPR035979 GO:0003676
Cme04g02457 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 473 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02457 Cme-Chr4:31131751 Cme06g01347 Cme-Chr6:11512384 1.14E-18 dispersed
Cme09g02022 Cme-Chr9:23900559 Cme04g02457 Cme-Chr4:31131751 6.15E-08 dispersed
Cme11g02312 Cme-Chr11:30197270 Cme04g02457 Cme-Chr4:31131751 1.49E-11 dispersed
Cme11g02454 Cme-Chr11:31263017 Cme04g02457 Cme-Chr4:31131751 1.28E-11 dispersed
Cme04g02457 Cme-Chr4:31131751 Cme01g00061 Cme-Chr1:465786 1.23E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02457 K13126 - csv:101203793 1153.66