Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02458 ATGCGGGCCTTCTCTTCCTTGATCTTGGCCTTAGCATCCGTCGTTCTGCCGGCGACGGTGGTCTACTGTGGCTTCCCCGTCCCACTTCTCTCTCTGTACAGGGCCGTCCCTTCTTCTTCCCCTGTCCAACTCGAAACCCTTAGAGCTCGGGACCGACTCAGACATGCCAGAATCTTGCAAGGTGTTGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTGCTCGTTGGGCTTTACTTTACCAAAGTCAAATTGGGCACTCCTCCGATGGAATTTACGGTGCAGATCGACACTGGAAGCGATATATTGTGGGTCAACTGCAATTCTTGCAACGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCTAGCTCATCAAGTTCTTCACTCGTCTCCTGTTCTGACCCAATATGCAATTCCGCATTCCAAACGACTGCAACACAGTGTTTAACTCAGAGTAATCAATGCAGTTACACTTTTCAGTATGGTGATGGAAGTGGAACATCGGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTCATGGGACATTCTATGATTGCTAACTCTTCAGCTAGTGTTGTTTTTGGCTGTAGCACCTATCAATCAGGAGACTTGACTAAATCAGACCATGCAATAGATGGTATTTTCGGATTTGGCCCCGGGGATTTGTCTGTTATATCACAGTTGTCAGCTCGAGGGATAACCCCTAAAGGAGAAGGAAATGGTGGTGGCATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGTCCCTCCTCCCTGCTATCAGTAAAACCCAAGGCATACAAATATCCAAGATAACAGAGCAAGAGTTTTTCTGTTCCTATATATTTACCGATGGAAAATATGAACTCAGTTCAACAAACAAACAAGATAACAAGAACAGAAAATACAATAAGGAATATAGGCTCAGCAAATTCGAGATAGCCAAGCCTCACTATAACTTATATCTGCAAAGCATCACTGTCAATGGTCAGACACTCCCAATTGATCCATCTGTGTTTGCAACTTCAATAAATCGAGGGACTATTATAGACTCTGGGACAACATTGGCTTACCTTGTCGAAGAAGCATATACTCCATTTGTCAGCGCTATAACTGCTGCTGTTTCCCAGTCTGTAACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTGGGCGAGATATTTCCTTTGGTTAGCTTAAACTTCGCGGGCAGTGCATCCATGGTGTTAAAACCCGAGGAATATCTTATGCATCTAGGCTTTTATGATGGTGCTGCATTGTGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGGTTCTCAAGCTGTAAATGTATCTGTCACATCTGGGAAGAACGAGTTCGTCAATGCAGGACAGCTAAGCGTGAGCAGCTCGTCCCGAGATAAGCTCCTTCAGTCACTAACTATGGAAGCAGTAGCAGTGTTAACGAGTCTCATTTTGTTCATCCACTCCCAGCTTCTAGAGAGAGAGGTTCAAGGTGATTGGCTCTTGATAAGTGATGTCAAAAGGATTAAATTTTTATAG 1629 44.32 MRAFSSLILALASVVLPATVVYCGFPVPLLSLYRAVPSSSPVQLETLRARDRLRHARILQGVVDFSVEGSSDPLLVGLYFTKVKLGTPPMEFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLVSCSDPICNSAFQTTATQCLTQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANSSASVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKGEGNGGGILVLGEVLEPGIVYSPLVPSQSLLPAISKTQGIQISKITEQEFFCSYIFTDGKYELSSTNKQDNKNRKYNKEYRLSKFEIAKPHYNLYLQSITVNGQTLPIDPSVFATSINRGTIIDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGFQKVQEGVTILGGSQAVNVSVTSGKNEFVNAGQLSVSSSSRDKLLQSLTMEAVAVLTSLILFIHSQLLEREVQGDWLLISDVKRIKFL 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31136863 31142095 - MELO3C009411.2.1 Cme04g02458 326719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02458 542 Gene3D Acid Proteases 321 476 IPR021109 -
Cme04g02458 542 Pfam Xylanase inhibitor C-terminal 336 473 IPR032799 -
Cme04g02458 542 Gene3D Acid Proteases 63 258 IPR021109 -
Cme04g02458 542 PANTHER ASPARTYL PROTEASES 5 273 IPR001461 GO:0004190|GO:0006508
Cme04g02458 542 ProSiteProfiles Peptidase family A1 domain profile. 79 491 IPR033121 -
Cme04g02458 542 PANTHER ASPARTYL PROTEASES 330 467 IPR001461 GO:0004190|GO:0006508
Cme04g02458 542 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 273 - -
Cme04g02458 542 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 330 467 - -
Cme04g02458 542 SUPERFAMILY Acid proteases 76 471 IPR021109 -
Cme04g02458 542 CDD pepsin_A_like_plant 79 476 IPR034161 -
Cme04g02458 542 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Cme04g02458 542 PRINTS Pepsin (A1) aspartic protease family signature 366 377 IPR001461 GO:0004190|GO:0006508
Cme04g02458 542 Pfam Xylanase inhibitor N-terminal 79 243 IPR032861 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02458 Cme08g01252 CCT
Cme04g02458 Cme08g01252 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02458 Cme-Chr4:31136863 Cme05g00948 Cme-Chr5:13113053 3.26E-56 dispersed
Cme11g01865 Cme-Chr11:26841203 Cme04g02458 Cme-Chr4:31136863 8.88E-57 wgd
Cme04g02458 Cme-Chr4:31136863 Cme08g01252 Cme-Chr8:8967410 1.43E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02458 - - csv:101204039 502.286