Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02459 ATGGCAGATGATGATGTTGCTCCAGATTCTACCTCCAATGGCTCGTCGTGTGACGCCACCATCACTCATTCTCCGAGTACTGCCCCATTCGTAGTTTCACCAATGCCCAAACGATCTTGGGGCAATGAAGAAGACGATGATGTGGTTGCTGATACTGGAGGTTCATCCTCTGTGCCTTCCGAGGTCATGGAATCCCTTAAAATTGAAGACGAAACGACGCTTGAAGAACCCATAGACTCTAACATCACAGCCGTGACAACTGGTGATACTCCATATTCATCAGCTAGTACTTTTGAGGACTTGAATCTGTCTAAGGAGTTGTTGAAGGGTTTGTATGTTGAGATGAGATTCCATAAGCCAAGTAAGATTCAAGCTATAAGTTTACCTATGATCCTGACTCCTCCTTACAAACATTTAATTGCTCAAGCACACAATGGTTCTGGAAAGACTACATGTTTTGTGCTTGGGATGTTGAGTCGTGTTGATGTGAACTTGAAGGCTCCTCAGGCATTTTGCATATGTCCTACAAGGGAGTTAGCCATGCAAAATATTGAGGTTCTTAAGAAAATGGGAAAATACACTGGGATAACTTCAGAGTGTGCTGTTCCCGCTGACAGTGCAAACTATATGCCGGTATCAAAGCGGCCACCCATAACTGCGCAAGTTGTGATTGGAACTCCTGGCACAATAAAGAAATGGATGTCAGGGAGGAAGTTGGGAGTAAGCTGCGTGAAGATTCTTGTTTTTGATGAGGCCGATCATATGCTTGGCGAGGATGGCTTTCAGGATGATTCATTGAGAATCATGAGGGACATTGAGAGAAGTAGCTCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTCGATGAGAATGTTAAAAACTTTGTCTCTAGGGTTGTTAAAGATTACAACCAACTGTTTGTGAAGAAGGAAGAACTATCTTTGGAGAGTGTGAAGCAATTCAAGTTGATATGTCCAAATGAACAAACTAAAATCCGAGTCATAAAAGATAGAATTTTTGAACTTGCAGACAAATTGGGTCAAACAATTATATTTGTGGCCACAAGAAACAGTGCTGGAGTGTTACATAAGGCACTAGTTGATCTTGGTTATGATGTGACTACCATCCAAGGGGCAATGACGAATGACATTAGAGACAAAATAATAAAAGAGTTCAAAGACGGTTTGACTAAAGTTCTTATTTCGACTGACCTTCTAGCTCGAGGCTTTGATCAGCAGCAAGTTAATCTAGTTATCAATTATGATCTTCCTCTTAAACATGATCCTTCTTCACAAGCGATGAAATATAGATCTTCCTCATCGTCAGAGCCTAACTTCGAGGTGTATCTTCATCGAATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTCTGTGGCGATCAGGAAATCAAGCGAATGGACAAAATTCAGAAGCATTTTGGCTCTGAAGTAATAGAGGTTCGAGACAGTGATGAGGACATTCAAGCGGCCTTAAAATCTGCTGGATTGATTTAA 1530 42.09 MADDDVAPDSTSNGSSCDATITHSPSTAPFVVSPMPKRSWGNEEDDDVVADTGGSSSVPSEVMESLKIEDETTLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMRFHKPSKIQAISLPMILTPPYKHLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYMPVSKRPPITAQVVIGTPGTIKKWMSGRKLGVSCVKILVFDEADHMLGEDGFQDDSLRIMRDIERSSSHCQVLLFSATFDENVKNFVSRVVKDYNQLFVKKEELSLESVKQFKLICPNEQTKIRVIKDRIFELADKLGQTIIFVATRNSAGVLHKALVDLGYDVTTIQGAMTNDIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPLKHDPSSQAMKYRSSSSSEPNFEVYLHRIGRAGRFGRKGAVFNLLCGDQEIKRMDKIQKHFGSEVIEVRDSDEDIQAALKSAGLI 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31142478 31145692 + MELO3C009410.2.1 Cme04g02459 326720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02459 509 MobiDBLite consensus disorder prediction 8 29 - -
Cme04g02459 509 SMART helicmild6 360 460 IPR001650 -
Cme04g02459 509 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 125 IPR014014 GO:0003724
Cme04g02459 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 476 IPR027417 -
Cme04g02459 509 Gene3D - 79 312 IPR027417 -
Cme04g02459 509 Pfam DEAD/DEAH box helicase 122 294 IPR011545 GO:0003676|GO:0005524
Cme04g02459 509 Gene3D - 313 500 IPR027417 -
Cme04g02459 509 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 490 - -
Cme04g02459 509 CDD DEADc_DDX19_DDX25 103 306 - -
Cme04g02459 509 Pfam Helicase conserved C-terminal domain 332 460 IPR001650 -
Cme04g02459 509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 306 IPR014001 -
Cme04g02459 509 PANTHER DEAD-BOX HELICASE DBP80 75 490 - -
Cme04g02459 509 SMART ultradead3 116 321 IPR014001 -
Cme04g02459 509 MobiDBLite consensus disorder prediction 1 59 - -
Cme04g02459 509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 500 IPR001650 -
Cme04g02459 509 CDD SF2_C_DEAD 318 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02459 Cme-Chr4:31142478 Cme09g01075 Cme-Chr9:15146892 0 dispersed
Cme04g02459 Cme-Chr4:31142478 Cme01g02831 Cme-Chr1:35251061 1.34E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02459 K18655 - csv:101219875 960.674