Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02471 | ATGAGGATCAAAACAAACTTCTTTTGGTTCTATACTCTTCTCATTGTAGCTCTTTTCATCACCATTGTCCTGCGTTCATTCCCGCTTCCCTTGACGGCCATTGTTGCCACTGTCGGTCCTCACAGCAGTGCTTTTGAAATTGGCGTTTTCGGCAGTCTAGTGAAAGAGAGTGGTTTGGATGAGATTTTATCTCTTGTGACTCAATATCTGTCCAAACCCCAATACCAATGGAGAGATAAGAAAAGTTGTGATGAGAAGAAATGGGACTCCAAGTTGATATCTTTGTACAATGTTTCACTCACTTTGACTGTTGATTTGAAGGGATGTGCAAATTTCAGCAGTGTACAAACTGCAGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCTTATCTTAATTAACTCTGGAGTCTATAGGGAGAAGGTAGTGATAGAAGCCAACAAAACAAACTTGATAATTGAAGGTCAAAGTTATCTCGACACTGCAATAGAATGGAATGACACAGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATTTTTGCTTCAAACTTCATTGCCTACAACATCAGCTTCAAAAACACAGCTCCTGAGGCAACTCCCGGGATTGTTGGAGGACAAGCAGTTGCAGTTCGAATTGCAGGAGATAAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTTTATGATGACAAAGGAAGACATTATTTCAAAACATGTTTCATTCAAGGATCCATTGATTTCATCTTCGGCAATGCTCGATCGCTCTACGATGATCAAATCAATAGCAAAGGAAGTGTTGGGTGGTGGGGTGAGTGGAGCCATCACAGCTCAGGGAAGGCAAACAAGAAGTGA | 879 | 42.21 | MRIKTNFFWFYTLLIVALFITIVLRSFPLPLTAIVATVGPHSSAFEIGVFGSLVKESGLDEILSLVTQYLSKPQYQWRDKKSCDEKKWDSKLISLYNVSLTLTVDLKGCANFSSVQTAVDAVPDYGSSRTLILINSGVYREKVVIEANKTNLIIEGQSYLDTAIEWNDTANSTGGTTYSSSVTIFASNFIAYNISFKNTAPEATPGIVGGQAVAVRIAGDKAAFYGCGFYGAQDTLYDDKGRHYFKTCFIQGSIDFIFGNARSLYDDQINSKGSVGWWGEWSHHSSGKANKK | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31220936 | 31223383 | - | MELO3C009396.2.1 | Cme04g02471 | 326732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02471 | 292 | Pfam | Pectinesterase | 103 | 265 | IPR000070 | GO:0030599|GO:0042545 | |
| Cme04g02471 | 292 | Gene3D | - | 63 | 287 | IPR012334 | - | |
| Cme04g02471 | 292 | PANTHER | PECTINESTERASE 14-RELATED | 20 | 270 | - | - | |
| Cme04g02471 | 292 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 20 | 270 | - | - | |
| Cme04g02471 | 292 | ProSitePatterns | Pectinesterase signature 2. | 250 | 259 | IPR033131 | - | |
| Cme04g02471 | 292 | SUPERFAMILY | Pectin lyase-like | 98 | 267 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02471 | Cme-Chr4:31220936 | Cme07g01488 | Cme-Chr7:20767836 | 1.77E-70 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02471 | - | - | csv:101219157 | 498.049 |