Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02472 ATGAAGCGGGAGTTGGCTTTTGCTTTGGAAGTTCAATCTCAGCTCGAAGGGACTCTTGGTCATACTCGTAGTGAGACTCTAGCTGAGGCGAGGCCAGGTAGTAGTTATTTAGATGAGACTGCTCGGAGTGGTGGCTGCAAAAGGTTTAAAGGCTCTGTTGTGAATGGTCTGATTGTGTATACCAGGGGAAGGAGGTCTCAGATCAATGTGTACAGCGGATTGTCGGAGAATGGTAACAGGAAAAAGTGCGATATTACAGTTGGGCGGGAGGTTCTTGGAAGCTTCGCACCTGAGGAAAGTTGTAGAACTGAAGAGGTTCAAATTCAAAAGACGAGCTCTGTCTGTAAGAAAGAGTCCGATGGGGTGGTGGAAAATTATGGAAATAAGGAAGAAGGGGCTGAAGGGAGTTCTTTAGTTATTGCAAAGGACAGAAAAGTTGAGGGGAATTTTCCTGGGTGGGGAATTAAGCGCTTTACACGCTCCTCATTGGAGCCGAAGGTTGAGCCCATGGAAGTCACCCCAATTGCAATAGGCTCAGTTAAAGAGGAAGTTATTTCAGATGTCGGCGGGGAAACAAGTGAGACAGTCAACTCTCTGTCAACTCCGAAGAATAAGTTGGAATTGAAAATGTCGAAGAAGATTGCACTGAATAAGAGGCCAATGACTGTGAGAGAGCTGTTTGAAACTGGTTTGCTCGAGGGTGTACCTGTCATCTACATGGGTGTAAAGAAGGCATATGACTTTGGTCTGCGCGGTACGATTAAAGATAGTGGGATTTTGTGTACATGCTCCTCCTGCAATGGATGCAGAGTCATCCCTCCTTCACAATTTGAGATCCACGCTTGTAACCAATATAAACGAGCAGCACAGTATATATGTCTTGAGAATGGGAAGAGCCTGCTCGACTTGTTGAAAGCATGCAAGGGAAGTAGGCAGACCCTTGAGGCTACCATACAAAGTCTGATTAGCTCTTCTCCAGAAGAAAAACATTTTACGTGTAGAGACTGTAAAGGATGCTTTCCTTCATCCGTTGGACAAGTGGGACCTTTATGCCCTTCGTGCGAGGAATCAAAGCGATCCAAGTGTACGCTGACACTGCCAGCCCCTCCCATTTCCGGAATTGGTAAGAGATTGAGACTGGCAGAACCAACCACGTCAAAATCATCTGGAAGTGCTTCTGTATCTATTTCTTCACGATATAAACGCAAATGGGTAACAAAAGCAAAGTCAAAATCGTCCGAATACGCTTCCATCTCAAGGTCCCCCAGAAGTGCGCCAATGCGTATTCCTTCGAAGAATAAGAGTGCATTGAAGATGAGAAAGAAGTCATTGAAACCAGCCTTAATGTTAAAATCCTCCCAAAGTGCTTCAAAGTGCAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAACGAAAGATCAGAGGTTACATAAGTTGGTTTTTGAGGAAGACGGATTGCCTGATGGAACTGAAGTAGCTTATTTTGCCAGGGGTCAGAAATTGCTCCAGGGTTATAAGAAGGGATCTGGAATTTTATGTTGCTGCTGTAATTGTGTGGTTAGTCCTTCACAATTTGAAGTTCATGCTGGTTGGTCTTCTCGAAAGAAACCTTATGCATACATTTACACATCAAATGGAGTTTCTCTGCATGAATTGGCAATCTCTCTCTCGAAAGGGCGCAAGTATTCTGCAAAGGATAATGATGACTTATGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCATTATCAAGTATTCCTCGTGGTGATTGGTATTGTAAATTTTGCCAGAATATGTTCCAGAGAGAAAAGTTTGTTGAGCATAATGTCAATGCTGTTGCAGCGGGAAGGGTACATGGAGTTGACCCTATTGAGCAGATAACTAAAAGATGCATTCGCATTGTTAGGAACATAGAAACAGATCTTAGTGGATGTGTGCTATGTCGCGGCTCTGATTTCAGCAAATCAGGTTTTGGTCCCCGCACAATTATACTCTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTAAAAGACCACAAAATGGCATTTCTTAAGGAATTGCCAAGAGGAAAGTGGTTTTGTAGCGTAGTTTGTACGAGGATACATTCTGCTCTACAGAAGCTGCTAATTCGTGGGCCAGAAAAGCTTCCAAATTCACTTTTAGGTGCTGTCAATAGAAAGCTTGGAGAAAATGGTTCAGACATTCAGGCTGATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGTTTGCTATTGTCAGAGGCCATTGCTATCTTCCATGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGTGATCTTATTCCAGCCATGGTTTATGGGAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAATTGTCAACTCATTTGTTGTATCTGCTGCAATGCTTCGAGTTTTTGGGCAAGATATTGCAGAGCTGCCATTGGTTGCGACAAGTAATGGTAACCATGGAAAGGGCTACTTCCAAACATTGTTTTCGTGCATTGAGAGGCTGCTAGCTTTCTTGAAAGTCAAATGCCTTGTTCTCCCAGCTGCTGAAGAAGCTGAGTCCATTTGGACTGAAAAATTTGGTTTTGAGAGAATAAAACCAGACCAGCTCAGCAGCTATAGAAGAAGTTGCTGCCAGATGGTGACATTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCCTCGTGTCGGGTTGTAGGTGCTCCCTTGTGA 2814 43.6 MKRELAFALEVQSQLEGTLGHTRSETLAEARPGSSYLDETARSGGCKRFKGSVVNGLIVYTRGRRSQINVYSGLSENGNRKKCDITVGREVLGSFAPEESCRTEEVQIQKTSSVCKKESDGVVENYGNKEEGAEGSSLVIAKDRKVEGNFPGWGIKRFTRSSLEPKVEPMEVTPIAIGSVKEEVISDVGGETSETVNSLSTPKNKLELKMSKKIALNKRPMTVRELFETGLLEGVPVIYMGVKKAYDFGLRGTIKDSGILCTCSSCNGCRVIPPSQFEIHACNQYKRAAQYICLENGKSLLDLLKACKGSRQTLEATIQSLISSSPEEKHFTCRDCKGCFPSSVGQVGPLCPSCEESKRSKCTLTLPAPPISGIGKRLRLAEPTTSKSSGSASVSISSRYKRKWVTKAKSKSSEYASISRSPRSAPMRIPSKNKSALKMRKKSLKPALMLKSSQSASKCSSSLAKNQWKITTKDQRLHKLVFEEDGLPDGTEVAYFARGQKLLQGYKKGSGILCCCCNCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIETDLSGCVLCRGSDFSKSGFGPRTIILCDQCEKEFHVGCLKDHKMAFLKELPRGKWFCSVVCTRIHSALQKLLIRGPEKLPNSLLGAVNRKLGENGSDIQADVDVSWRLISGKIASPETRLLLSEAIAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILIVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFERIKPDQLSSYRRSCCQMVTFKGTSMLQKTVPSCRVVGAPL 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31223673 31233828 - MELO3C009393.2.1 Cme04g02472 326733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02472 937 PANTHER AUTOIMMUNE REGULATOR 1 933 - -
Cme04g02472 937 SMART PHD_3 571 612 IPR001965 -
Cme04g02472 937 SMART PHD_3 659 715 IPR001965 -
Cme04g02472 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 718 IPR013083 -
Cme04g02472 937 ProSiteProfiles Zinc finger PHD-type profile. 569 614 IPR019787 -
Cme04g02472 937 SUPERFAMILY FYVE/PHD zinc finger 656 713 IPR011011 -
Cme04g02472 937 Pfam PHD-finger 572 613 IPR019787 -
Cme04g02472 937 Pfam Tify domain binding domain 252 307 IPR032308 -
Cme04g02472 937 Pfam Tify domain binding domain 505 555 IPR032308 -
Cme04g02472 937 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 933 - -
Cme04g02472 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 645 IPR013083 -
Cme04g02472 937 ProSitePatterns Zinc finger PHD-type signature. 572 611 IPR019786 -
Cme04g02472 937 CDD PHD1_AIRE 571 611 - -
Cme04g02472 937 SUPERFAMILY FYVE/PHD zinc finger 560 616 IPR011011 -
Cme04g02472 937 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 809 900 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02472 - - - csv:101203549 1797.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02472 Cme-Chr4:31223673 Cme04g02602 Cme-Chr4:31970247 1.35E-14 dispersed
Cme01g01562 Cme-Chr1:20733835 Cme04g02472 Cme-Chr4:31223673 9.15E-40 transposed
Cme01g01745 Cme-Chr1:24451361 Cme04g02472 Cme-Chr4:31223673 5.76E-52 transposed
Cme07g01693 Cme-Chr7:22494934 Cme04g02472 Cme-Chr4:31223673 8.27E-06 transposed
Cme07g00544 Cme-Chr7:4534343 Cme04g02472 Cme-Chr4:31223673 2.16E-38 transposed
Cme11g01852 Cme-Chr11:26693392 Cme04g02472 Cme-Chr4:31223673 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02472 . . . . . . . . Sed04g1413 . . . . . . . . Bhi11g02031 Tan08g1823 Cmetu04g2275 . . . . . . . . . . . Lsi03g01970 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02472 . 212 933 PHD Transcription Factor Family AT2G36720 54.4 1.9e-225 779.6
Cme04g02602 . 18 845 PHD Transcription Factor Family AT3G53680 53.2 3.2e-250 861.7
Cme10g00876 . 435 564 PHD Transcription Factor Family AT3G53680 53.8 2.5e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41277 PF16135 TDBD 7.30E-13 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02472 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.199199 0.213598