Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02472 | ATGAAGCGGGAGTTGGCTTTTGCTTTGGAAGTTCAATCTCAGCTCGAAGGGACTCTTGGTCATACTCGTAGTGAGACTCTAGCTGAGGCGAGGCCAGGTAGTAGTTATTTAGATGAGACTGCTCGGAGTGGTGGCTGCAAAAGGTTTAAAGGCTCTGTTGTGAATGGTCTGATTGTGTATACCAGGGGAAGGAGGTCTCAGATCAATGTGTACAGCGGATTGTCGGAGAATGGTAACAGGAAAAAGTGCGATATTACAGTTGGGCGGGAGGTTCTTGGAAGCTTCGCACCTGAGGAAAGTTGTAGAACTGAAGAGGTTCAAATTCAAAAGACGAGCTCTGTCTGTAAGAAAGAGTCCGATGGGGTGGTGGAAAATTATGGAAATAAGGAAGAAGGGGCTGAAGGGAGTTCTTTAGTTATTGCAAAGGACAGAAAAGTTGAGGGGAATTTTCCTGGGTGGGGAATTAAGCGCTTTACACGCTCCTCATTGGAGCCGAAGGTTGAGCCCATGGAAGTCACCCCAATTGCAATAGGCTCAGTTAAAGAGGAAGTTATTTCAGATGTCGGCGGGGAAACAAGTGAGACAGTCAACTCTCTGTCAACTCCGAAGAATAAGTTGGAATTGAAAATGTCGAAGAAGATTGCACTGAATAAGAGGCCAATGACTGTGAGAGAGCTGTTTGAAACTGGTTTGCTCGAGGGTGTACCTGTCATCTACATGGGTGTAAAGAAGGCATATGACTTTGGTCTGCGCGGTACGATTAAAGATAGTGGGATTTTGTGTACATGCTCCTCCTGCAATGGATGCAGAGTCATCCCTCCTTCACAATTTGAGATCCACGCTTGTAACCAATATAAACGAGCAGCACAGTATATATGTCTTGAGAATGGGAAGAGCCTGCTCGACTTGTTGAAAGCATGCAAGGGAAGTAGGCAGACCCTTGAGGCTACCATACAAAGTCTGATTAGCTCTTCTCCAGAAGAAAAACATTTTACGTGTAGAGACTGTAAAGGATGCTTTCCTTCATCCGTTGGACAAGTGGGACCTTTATGCCCTTCGTGCGAGGAATCAAAGCGATCCAAGTGTACGCTGACACTGCCAGCCCCTCCCATTTCCGGAATTGGTAAGAGATTGAGACTGGCAGAACCAACCACGTCAAAATCATCTGGAAGTGCTTCTGTATCTATTTCTTCACGATATAAACGCAAATGGGTAACAAAAGCAAAGTCAAAATCGTCCGAATACGCTTCCATCTCAAGGTCCCCCAGAAGTGCGCCAATGCGTATTCCTTCGAAGAATAAGAGTGCATTGAAGATGAGAAAGAAGTCATTGAAACCAGCCTTAATGTTAAAATCCTCCCAAAGTGCTTCAAAGTGCAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAACGAAAGATCAGAGGTTACATAAGTTGGTTTTTGAGGAAGACGGATTGCCTGATGGAACTGAAGTAGCTTATTTTGCCAGGGGTCAGAAATTGCTCCAGGGTTATAAGAAGGGATCTGGAATTTTATGTTGCTGCTGTAATTGTGTGGTTAGTCCTTCACAATTTGAAGTTCATGCTGGTTGGTCTTCTCGAAAGAAACCTTATGCATACATTTACACATCAAATGGAGTTTCTCTGCATGAATTGGCAATCTCTCTCTCGAAAGGGCGCAAGTATTCTGCAAAGGATAATGATGACTTATGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCATTATCAAGTATTCCTCGTGGTGATTGGTATTGTAAATTTTGCCAGAATATGTTCCAGAGAGAAAAGTTTGTTGAGCATAATGTCAATGCTGTTGCAGCGGGAAGGGTACATGGAGTTGACCCTATTGAGCAGATAACTAAAAGATGCATTCGCATTGTTAGGAACATAGAAACAGATCTTAGTGGATGTGTGCTATGTCGCGGCTCTGATTTCAGCAAATCAGGTTTTGGTCCCCGCACAATTATACTCTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTAAAAGACCACAAAATGGCATTTCTTAAGGAATTGCCAAGAGGAAAGTGGTTTTGTAGCGTAGTTTGTACGAGGATACATTCTGCTCTACAGAAGCTGCTAATTCGTGGGCCAGAAAAGCTTCCAAATTCACTTTTAGGTGCTGTCAATAGAAAGCTTGGAGAAAATGGTTCAGACATTCAGGCTGATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGTTTGCTATTGTCAGAGGCCATTGCTATCTTCCATGATCGCTTTGATCCTATAGTTGATATAACAAGTGGACGTGATCTTATTCCAGCCATGGTTTATGGGAGGGATGTTGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAATTGTCAACTCATTTGTTGTATCTGCTGCAATGCTTCGAGTTTTTGGGCAAGATATTGCAGAGCTGCCATTGGTTGCGACAAGTAATGGTAACCATGGAAAGGGCTACTTCCAAACATTGTTTTCGTGCATTGAGAGGCTGCTAGCTTTCTTGAAAGTCAAATGCCTTGTTCTCCCAGCTGCTGAAGAAGCTGAGTCCATTTGGACTGAAAAATTTGGTTTTGAGAGAATAAAACCAGACCAGCTCAGCAGCTATAGAAGAAGTTGCTGCCAGATGGTGACATTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCCTCGTGTCGGGTTGTAGGTGCTCCCTTGTGA | 2814 | 43.6 | MKRELAFALEVQSQLEGTLGHTRSETLAEARPGSSYLDETARSGGCKRFKGSVVNGLIVYTRGRRSQINVYSGLSENGNRKKCDITVGREVLGSFAPEESCRTEEVQIQKTSSVCKKESDGVVENYGNKEEGAEGSSLVIAKDRKVEGNFPGWGIKRFTRSSLEPKVEPMEVTPIAIGSVKEEVISDVGGETSETVNSLSTPKNKLELKMSKKIALNKRPMTVRELFETGLLEGVPVIYMGVKKAYDFGLRGTIKDSGILCTCSSCNGCRVIPPSQFEIHACNQYKRAAQYICLENGKSLLDLLKACKGSRQTLEATIQSLISSSPEEKHFTCRDCKGCFPSSVGQVGPLCPSCEESKRSKCTLTLPAPPISGIGKRLRLAEPTTSKSSGSASVSISSRYKRKWVTKAKSKSSEYASISRSPRSAPMRIPSKNKSALKMRKKSLKPALMLKSSQSASKCSSSLAKNQWKITTKDQRLHKLVFEEDGLPDGTEVAYFARGQKLLQGYKKGSGILCCCCNCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNVNAVAAGRVHGVDPIEQITKRCIRIVRNIETDLSGCVLCRGSDFSKSGFGPRTIILCDQCEKEFHVGCLKDHKMAFLKELPRGKWFCSVVCTRIHSALQKLLIRGPEKLPNSLLGAVNRKLGENGSDIQADVDVSWRLISGKIASPETRLLLSEAIAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILIVNSFVVSAAMLRVFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFERIKPDQLSSYRRSCCQMVTFKGTSMLQKTVPSCRVVGAPL | 937 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31223673 | 31233828 | - | MELO3C009393.2.1 | Cme04g02472 | 326733 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02472 | 937 | PANTHER | AUTOIMMUNE REGULATOR | 1 | 933 | - | - | |
| Cme04g02472 | 937 | SMART | PHD_3 | 571 | 612 | IPR001965 | - | |
| Cme04g02472 | 937 | SMART | PHD_3 | 659 | 715 | IPR001965 | - | |
| Cme04g02472 | 937 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 655 | 718 | IPR013083 | - | |
| Cme04g02472 | 937 | ProSiteProfiles | Zinc finger PHD-type profile. | 569 | 614 | IPR019787 | - | |
| Cme04g02472 | 937 | SUPERFAMILY | FYVE/PHD zinc finger | 656 | 713 | IPR011011 | - | |
| Cme04g02472 | 937 | Pfam | PHD-finger | 572 | 613 | IPR019787 | - | |
| Cme04g02472 | 937 | Pfam | Tify domain binding domain | 252 | 307 | IPR032308 | - | |
| Cme04g02472 | 937 | Pfam | Tify domain binding domain | 505 | 555 | IPR032308 | - | |
| Cme04g02472 | 937 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 1 | 933 | - | - | |
| Cme04g02472 | 937 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 558 | 645 | IPR013083 | - | |
| Cme04g02472 | 937 | ProSitePatterns | Zinc finger PHD-type signature. | 572 | 611 | IPR019786 | - | |
| Cme04g02472 | 937 | CDD | PHD1_AIRE | 571 | 611 | - | - | |
| Cme04g02472 | 937 | SUPERFAMILY | FYVE/PHD zinc finger | 560 | 616 | IPR011011 | - | |
| Cme04g02472 | 937 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 809 | 900 | IPR016181 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02472 | Cme-Chr4:31223673 | Cme04g02602 | Cme-Chr4:31970247 | 1.35E-14 | dispersed | |
| Cme01g01562 | Cme-Chr1:20733835 | Cme04g02472 | Cme-Chr4:31223673 | 9.15E-40 | transposed | |
| Cme01g01745 | Cme-Chr1:24451361 | Cme04g02472 | Cme-Chr4:31223673 | 5.76E-52 | transposed | |
| Cme07g01693 | Cme-Chr7:22494934 | Cme04g02472 | Cme-Chr4:31223673 | 8.27E-06 | transposed | |
| Cme07g00544 | Cme-Chr7:4534343 | Cme04g02472 | Cme-Chr4:31223673 | 2.16E-38 | transposed | |
| Cme11g01852 | Cme-Chr11:26693392 | Cme04g02472 | Cme-Chr4:31223673 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41277 | PF16135 | TDBD | 7.30E-13 | No_clan | Cme | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02472 | - | - | csv:101203549 | 1797.71 |