Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02484 ATGGATAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAAAATGAAGCTATTGACCGTAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCTTATTTTATGCGCAATCATCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTATTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCTGCCCGTGAAGCAAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGGCATGCTTTTGTGCCCTTCTCCTTTATTTAAAATTGGAAGGCCCGGTTATCGAGTAACAAAGCAATTTGATTCTGAAACAAAGCAGCGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGGTTTATGTCCTCTTACGAGCAGCGTGTGCAACCTTTTGACAAACGATACCAATATCTTCTGTTTGCAGCCGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATAGACAAATCGACTCCAAAATTCTTTTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCGAACAAGCCACCACCTGTACCTGCAGCAAATGGAACAGTGCCATCTGGTGCACCTCCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCTCCACCTCCACCCCAGCAAGGAGCACCACCAAGAGTTCCTCCTCCTCCAATGCCAGGGTCCTTGCCGCCTCCACCTTCTGTAATGGCCAATGGTCCTCCTAGGCCGATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCAGTTGGCAATAATACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGGCCTCCTATGCCGCCTCCTCCACAGAGCTTCCCAGGTCAGGGTATCCGGCAGCCACCACCACCACCACCCAATATGGGATAG 1053 50.9 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTGMLLCPSPLFKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQPPPPPPNMG 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31292355 31295515 - MELO3C009381.2.1 Cme04g02484 326745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02484 350 Gene3D Classic Zinc Finger 46 89 - -
Cme04g02484 350 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Cme04g02484 350 SMART CactinC_cactus_3 89 225 - -
Cme04g02484 350 Gene3D - 113 228 - -
Cme04g02484 350 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Cme04g02484 350 MobiDBLite consensus disorder prediction 226 311 - -
Cme04g02484 350 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 119 213 IPR031781 -
Cme04g02484 350 MobiDBLite consensus disorder prediction 322 350 - -
Cme04g02484 350 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cme04g02484 350 PRINTS Proline rich extensin signature 224 245 - -
Cme04g02484 350 PRINTS Proline rich extensin signature 245 261 - -
Cme04g02484 350 PRINTS Proline rich extensin signature 264 281 - -
Cme04g02484 350 PRINTS Proline rich extensin signature 286 311 - -
Cme04g02484 350 MobiDBLite consensus disorder prediction 223 350 - -
Cme04g02484 350 Pfam Zinc-finger of C2H2 type 52 76 - -
Cme04g02484 350 MobiDBLite consensus disorder prediction 1 21 - -
Cme04g02484 350 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 344 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02484 K12826 - csv:101202831 501.13