Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02488 ATGCCGTTTCAAAGGATAGTTATCGCCGTGGGTCGGCCGGAGGAGGCCACCCATCCTGCCGCCCTGAAGGCCGCTTTGGCCGAGTTTATTTCTACTCTTATCTTCGTTTTTGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACTCATAATTCACCCACCACTCCGGCTGGCCTCATCATCGCCTCCATAGCTCATGGCTTTGCCCTTTTTGTCGGTGTCTCCACCGCCGCAAACATCTCCGGTGGACACCTTAACCCCGCCGTGACTTTCGGGGCCTTGCTCGGCGGTAACATCACTATCCTTCGCGGTATTCTTTATTGGATCGCTCAGCTCCTCGGCGCCGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCAATTACGGGATTCTTGCCAACAGCAGGGGTTGGAATATGGGAAGCATTTGTATTCGAGATTGTAATGACATTCGGTTTAGTCTACACTGTCTACGCCACCGCCATTGATCCCAAAAGAGGTGAACTGGGAGTCATTGCACCCATCGCCATCGGTTTAATCGTGGGCGCTAACATTTTGGTGGGCGGCCCATTCACCGGTGCCTCCATGAACCCTGCCGTCGCCTTCGGACCTGCCGTCATCTCTTGGTCTTGGGTTAACCATTGGATCTACTGGGCTGGCCCTCTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAACTGTTCTTCATTGGCTTCACCCACGAGCCTCTTCCGACTGCAGAGTACTGA 762 54.72 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTTPAGLIIASIAHGFALFVGVSTAANISGGHLNPAVTFGALLGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGIWEAFVFEIVMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVGANILVGGPFTGASMNPAVAFGPAVISWSWVNHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPTAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31313855 31315911 + MELO3C009377.2.1 Cme04g02488 326749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02488 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cme04g02488 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02488 253 PANTHER AQUAPORIN-8 7 253 IPR034294 -
Cme04g02488 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cme04g02488 253 PANTHER AQUAPORIN TIP1-1 7 253 - -
Cme04g02488 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02488 Cme08g01268 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02488 Cme-Chr4:31313855 Cme12g01777 Cme-Chr12:24357524 3.78E-94 dispersed
Cme09g01523 Cme-Chr9:20356405 Cme04g02488 Cme-Chr4:31313855 1.49E-58 transposed
Cme04g02488 Cme-Chr4:31313855 Cme08g01268 Cme-Chr8:9177803 5.88E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02488 K09873 - csv:101222386 476.478