Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02507 ATGGAGATCACGATGAACAAATCTTTCAATCCCCAATCGCGGATTTACTCTTCCCCTCGTCCTCCAATCCACTTTCCGACCGACCCCAAAATCTCCATCGTTTCATTCCTCTTTCGAAACTCCTCTTCTTATCCTAACGCCCTTGCCCTTGCCGATGCTGACTCCGGCGAATCCCTCACTTTCCGTCAGCTTCAAATCCAAGTCTCCAAGCTCGCTCGTGTGTTCAGCCAACTCGGGATTCAAAAAGGCGATGTGGTTCTCATATTCGCGCCTAATTCTATTCACTTCCTTGTTTGTTTCTTCGCCATTGTCGCCATCGGAGCCATTGCCACCACTTGTAATCCTGCTTACACTTTCGCTGAATTGTCAAAGCAAGTCGCTAACTGCAACCCTAAGCTAGTAATCACGGTTCCCGAACTCTGGGACGTAATCGGTAAACTCAACTTACCTTCTATGATTCTGGGTTCTAAAATTTCTTCAAAATTTTCCCGTTCCAACATCTGGAGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACAGGGATCAGTAAAGGAGTGATTTTGACTCACAGAAACTTCATAACGACGTCTTTAATGGTGACTCAAGATCAAGAGCTTCTTGGTGATCCAAGAAACGTGTTTTTATGTTTTCTCCCAATGTTTCATGTATTTGGTCTTTCTGTAATTGTTTACTCGCAGCTTCAAAGAGGAAACACCGTTGTTTCAATGGCGAAGTTTGAGCTGGAAAAGGCTTTGGGGTTGGTGATGAAGTACAAGATCACTCATCTTTATGTTGTTCCCCCTGTAATTATAGCTTTGACAAAGCAAAAGGTAGTGAAAAATTACGACTTGTCGTCGTTGCGGCAGATTTTATCTGGGGCGGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCTAAGATTATACCTCAGGCCAGGATCATCCAGGGATATGGTATGACAGAAACTTGTGGAGTTATTTCAGTGGAGAATATGGTAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGGTTCAGGAATTGAAGCCCAAATTTTGAGTATAGAAACACAGAAACGTCTACCACCCGGCGAAACCGGGGAAATTTGCGTCCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGAAAGCCACCAGCCAAACTATAGATGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTCATCAAATGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCGCTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCACATCCTGATGATAAAGCCGGTGAGGTCCCAATTGCATTTGTTGTTCGTTCACCCAATAGCTCGATAAGCGAAGAAGATGTTAAAAAATTTATTGCGGGACAGGTTGCACCATTCAAGAGATTAAGAAAAGTAACATTCACAAGTAGTGTTCCGAAGTCGGCTTCAGGAAAACTTCTGAGAAGGGAGGTCATAGCACAAGTCCGAGCCAAGATGTAA 1638 44.02 MEITMNKSFNPQSRIYSSPRPPIHFPTDPKISIVSFLFRNSSSYPNALALADADSGESLTFRQLQIQVSKLARVFSQLGIQKGDVVLIFAPNSIHFLVCFFAIVAIGAIATTCNPAYTFAELSKQVANCNPKLVITVPELWDVIGKLNLPSMILGSKISSKFSRSNIWSYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQELLGDPRNVFLCFLPMFHVFGLSVIVYSQLQRGNTVVSMAKFELEKALGLVMKYKITHLYVVPPVIIALTKQKVVKNYDLSSLRQILSGAAPLGKDVMEECSKIIPQARIIQGYGMTETCGVISVENMVVESTLSGATGSLGSGIEAQILSIETQKRLPPGETGEICVRGPNMMKGYFNNQKATSQTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPHPDDKAGEVPIAFVVRSPNSSISEEDVKKFIAGQVAPFKRLRKVTFTSSVPKSASGKLLRREVIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31408827 31412866 + MELO3C009362.2.1 Cme04g02507 326768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02507 545 Pfam AMP-binding enzyme 39 447 IPR000873 -
Cme04g02507 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cme04g02507 545 SUPERFAMILY Acetyl-CoA synthetase-like 16 543 - -
Cme04g02507 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 544 - -
Cme04g02507 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cme04g02507 545 Gene3D - 443 544 IPR045851 -
Cme04g02507 545 Gene3D - 14 442 IPR042099 -
Cme04g02507 545 CDD 4CL 25 536 - -
Cme04g02507 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02507 Cme-Chr4:31408827 Cme07g00071 Cme-Chr7:444827 1.40E-151 dispersed
Cme09g00996 Cme-Chr9:13998000 Cme04g02507 Cme-Chr4:31408827 8.83E-49 dispersed
Cme02g01783 Cme-Chr2:24675366 Cme04g02507 Cme-Chr4:31408827 6.48E-10 transposed
Cme05g00108 Cme-Chr5:683509 Cme04g02507 Cme-Chr4:31408827 2.85E-21 transposed
Cme06g01977 Cme-Chr6:24075032 Cme04g02507 Cme-Chr4:31408827 2.72E-32 transposed
Cme08g00081 Cme-Chr8:553783 Cme04g02507 Cme-Chr4:31408827 1.64E-37 transposed
Cme09g01106 Cme-Chr9:15666005 Cme04g02507 Cme-Chr4:31408827 4.59E-31 transposed
Cme09g01581 Cme-Chr9:20709713 Cme04g02507 Cme-Chr4:31408827 2.07E-60 transposed
Cme09g01750 Cme-Chr9:22002747 Cme04g02507 Cme-Chr4:31408827 6.69E-61 transposed
Cme04g01469 Cme-Chr4:20987851 Cme04g02507 Cme-Chr4:31408827 4.80E-94 transposed
Cme12g00392 Cme-Chr12:5642969 Cme04g02507 Cme-Chr4:31408827 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02507 K01904 - csv:101204417 1016.14