Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02508 ATGTCACAATATTCTGAAGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTCTCTCTTCTCATCCTCTTCCTCCTCCTCCTGACCCATTTATAACCAACAATCCAACACCCGAAGACACTGACCCTGAACACCTCAGACCCACACAAGAGCCTCAAGACGGAGTTGGCAGGGCTAAAAACAGAGAAATGGAGTCTACCACTGATTCCAAGAAGGAAAACGGCGGTGGCACTAGTGGGGAGAAGCCTGAGACTGTTACCGCCATTGGGTTTGGGGAGCTTTTCAGATTTGCCGATGGGTTGGATTATGTTTTGATGGCAATTGGGTCCGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTTTGTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGAAAACGGTTGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTACAAGCGGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGACAATAGTTCAAATTCGAGTTGTTTTTGCATTCGTGGGCGAATCAAGAGCATTGCAGAGATACTCCGCCGCATTGAAGATTTCTCAGAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCTACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAATGGCGGACTGGCCATAGCCACTATGTTTGCAGTGATGATTGGTGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTATCGTATAATTGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCGGGACTGGTTGAGCTGAAGAATGTTGATTTCGCATACCCATCAAGGCCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCTGGAAAAACTATAGCTCTGGTAGGAAGCAGTGGCTCCGGCAAGAGCACGGTTGTTGCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGACGGACGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTCGCTACCACCATCAAGGAGAATATTCTCTTAGGCAGACCTGAGGCAGACCAACTTGAGGTGGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGAGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATCGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATTCTCCTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTT 1593 47.14 MSQYSEEIKTTEQWKWSEMQGLELLSSHPLPPPPDPFITNNPTPEDTDPEHLRPTQEPQDGVGRAKNREMESTTDSKKENGGGTSGEKPETVTAIGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKKTVAEISCWMWTGERQSTKMRIKYLQAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFAYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVALIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31424745 31428481 + MELO3C009361.2.1 Cme04g02508 326769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02508 531 SUPERFAMILY ABC transporter transmembrane region 100 336 IPR036640 GO:0005524|GO:0016021
Cme04g02508 531 MobiDBLite consensus disorder prediction 23 90 - -
Cme04g02508 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 530 IPR027417 -
Cme04g02508 531 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 112 219 - -
Cme04g02508 531 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 218 531 - -
Cme04g02508 531 Pfam ABC transporter 373 522 IPR003439 GO:0005524
Cme04g02508 531 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 220 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g02508 531 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524
Cme04g02508 531 Gene3D - 345 530 IPR027417 -
Cme04g02508 531 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 531 IPR003439 GO:0005524
Cme04g02508 531 SMART AAA_5 382 531 IPR003593 -
Cme04g02508 531 CDD ABC_6TM_Pgp_ABCB1_D1_like 112 318 - -
Cme04g02508 531 Gene3D ABC transporter type 1, transmembrane domain 92 219 IPR036640 GO:0005524|GO:0016021
Cme04g02508 531 Gene3D ABC transporter type 1, transmembrane domain 220 344 IPR036640 GO:0005524|GO:0016021
Cme04g02508 531 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 112 219 IPR039421 -
Cme04g02508 531 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 218 531 IPR039421 -
Cme04g02508 531 MobiDBLite consensus disorder prediction 46 84 - -
Cme04g02508 531 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 158 218 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g02508 531 Pfam ABC transporter transmembrane region 220 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02508 Cme-Chr4:31424745 Cme04g00136 Cme-Chr4:1017562 1.93E-88 dispersed
Cme04g02508 Cme-Chr4:31424745 Cme04g02510 Cme-Chr4:31438390 9.57E-98 proximal
Cme04g02508 Cme-Chr4:31424745 Cme04g02512 Cme-Chr4:31439048 1.86E-118 proximal
Cme04g02508 Cme-Chr4:31424745 Cme04g02509 Cme-Chr4:31436975 1.50E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02508 K05658 - csv:101220974 841.647