Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02509 ATGTCACAATATTCTGAAGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGTGCTCCTCTCTTCTCATCCTCTTCCTCCTCCTGACCCATTTATCACCAACAATCCAACACCCGAAAACACTGACCCTGAACACCTCAGACCCACACAAGAGCCTCAAGACGGAGTTGGCAGAGCTAAAAACAGAGCAATGGAGTCTACCACTGATTCCAAGAAGGAAAACGGCGATGGCACTAGTGGGGAGAAGCCTGAGGCTGTTACCGCCATTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCCGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCTTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTACAAGCGGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGGTGCGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAGAAAGAAAAAACCAACTCTATTTTCAGTAATCTCTCTATTTCGAAACCCCCTTGTACACGCCTAATGGAAGTAACT 822 46.11 MSQYSEEIKTTEQWKWSEMQGLVLLSSHPLPPPDPFITNNPTPENTDPEHLRPTQEPQDGVGRAKNRAMESTTDSKKENGDGTSGEKPEAVTAIGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLQAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKVRSKKKKKKKKKKERKKKEKTNSIFSNLSISKPPCTRLMEVT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31436975 31438377 + MELO3C009358.2.1 Cme04g02509 326770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02509 274 MobiDBLite consensus disorder prediction 234 274 - -
Cme04g02509 274 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 111 233 IPR039421 -
Cme04g02509 274 SUPERFAMILY ABC transporter transmembrane region 99 232 IPR036640 GO:0005524|GO:0016021
Cme04g02509 274 Pfam ABC transporter transmembrane region 113 234 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g02509 274 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 111 233 - -
Cme04g02509 274 MobiDBLite consensus disorder prediction 25 88 - -
Cme04g02509 274 MobiDBLite consensus disorder prediction 234 250 - -
Cme04g02509 274 Coils Coil 233 253 - -
Cme04g02509 274 MobiDBLite consensus disorder prediction 69 84 - -
Cme04g02509 274 Gene3D ABC transporter type 1, transmembrane domain 91 235 IPR036640 GO:0005524|GO:0016021
Cme04g02509 274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 233 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02509 Cme-Chr4:31436975 Cme09g00284 Cme-Chr9:2201844 2.60E-07 dispersed
Cme04g02508 Cme-Chr4:31424745 Cme04g02509 Cme-Chr4:31436975 1.50E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02509 K05658 - cmo:103486499 475.707