Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02510 ATGGCAACTTTCGTGTCCGGGTTCGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCATTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCTAAGCTCTCGGCCAAGACCCAGGAAGCTCTTTCAGAAGCCGGGAATATTGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCATTCGTGGGCGAATCAAGAGCATTGCAGAGATACTCCGCCGCATTGAAGATTTCTCAGAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCTACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAATGGCGGACTGGCCATAGCCACTATGTTTGCAGTGATGATTGGTGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATTGACCATAAGCCTACTCTAAACCGCAACAACAAATCTGGTTTGGAATTAGAATCAGTTTCGGGACTGATTGAGCTGAAGAAT 600 47.17 MATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNKSGLELESVSGLIELKN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31438390 31439182 + MELO3C001110.2.1 Cme04g02510 326771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02510 200 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 1 200 - -
Cme04g02510 200 Gene3D ABC transporter type 1, transmembrane domain 1 200 IPR036640 GO:0005524|GO:0016021
Cme04g02510 200 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 159 - -
Cme04g02510 200 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g02510 200 SUPERFAMILY ABC transporter transmembrane region 2 177 IPR036640 GO:0005524|GO:0016021
Cme04g02510 200 Pfam ABC transporter transmembrane region 1 146 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme04g02510 200 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 200 IPR039421 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02510 Cme-Chr4:31438390 Cme09g00284 Cme-Chr9:2201844 3.68E-14 dispersed
Cme04g02508 Cme-Chr4:31424745 Cme04g02510 Cme-Chr4:31438390 9.57E-98 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02510 K05658 - csv:101220974 376.326