Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02512 ATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATTGACCATAAGCCTACTCTAAACCGCAACAACAAATCTGGTTTGGAATTAGAATCAGTTTCGGGACTGATTGAGCTGAAGAATGTTGATTTCGCATACCCATCAAGGCCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCTGGAAAAACTATAGCTCTGGTTGGAAGCAGCGGCTCCGGCAAGAGCACGGTTGTTGCCCTAATTGAAAGATTCTATGACCCCAATTCAGGAGAAGTTCTACTAGACGGACGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGACAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTAGGCAGACCTGAAGCAGACCAACTTGAGGTAGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACTCAGGTTAGATAA 525 43.81 MSSFAKAKVAAAKIYRIIDHKPTLNRNNKSGLELESVSGLIELKNVDFAYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVALIERFYDPNSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEADQLEVEEAARVANAHSFIIKLPEGYDTQVR 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31439048 31439721 + MELO3C009357.2.1 Cme04g02512 326773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02512 174 Pfam ABC transporter 59 153 IPR003439 GO:0005524
Cme04g02512 174 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 1 173 - -
Cme04g02512 174 Gene3D ABC transporter type 1, transmembrane domain 2 30 IPR036640 GO:0005524|GO:0016021
Cme04g02512 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 173 IPR027417 -
Cme04g02512 174 Gene3D - 31 173 IPR027417 -
Cme04g02512 174 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 173 IPR039421 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02512 Cme-Chr4:31439048 Cme09g00570 Cme-Chr9:5830550 6.58E-53 dispersed
Cme04g02508 Cme-Chr4:31424745 Cme04g02512 Cme-Chr4:31439048 1.86E-118 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02512 K05658 - csv:101220974 319.316