Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02532 ATGGCGAGCAGCGACATCGAAATCGGAGGCCGGGGGGCGGCGTCGAGGAAAGACTATTTCGATCCGCTTCCGGCGCCGATGATCGACATGGAGGAGTTCGCGAAATGGTCGTTTTACAGAGCTATCATTGCTGAGTTTGTGGCGACTTTGTTGTTTCTGTACGTCGTCGTTTTGACGGTGATCGGAAATAGTAGCCAGACGGACCCGCTCAACGGTGGGAATGTATGCGCCGGAGTTGGCCCCGTAGGAATCTCGTGGGTCTTCGGGGGTATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGAGGGCACATAAATCCAGCAGTGACATTCGGAATGTTTTTAACAAGAAAGATATCGTTGGTCCGAGCGTTGCTCTACATCATAGCTCAGTGCATAGGGGCCCTATGTGGGTGCGCCTTGGTCAAGACATTGCAGAGAGATCGTTACAACCACTACGGCGGTGGTGCTAATCAGCTCGTTGATGGTTATAGCCGAGGCACTGGCCTTGCTGTTGAGATTGTGGGCACCTTTGTTCTTCTGTATACCGTCTTCTCCGCCACTGATCCCAAACGCAATGCTAGAGATTCCCATGTTCCTGTCTTGGCTCCACTCCCCATTGGCTTTGCTGTCTTCATGGTTCACCTCGCCACCATTCCCGTCACCGGCACTGGCATTAACCCTGCTCGAAGCTTCGGTGCTGCCGTCATCATCAACAATCATAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTAATTGGATCAACAATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTTAGAAGCTCACCGCCAACTCATTAA 870 51.38 MASSDIEIGGRGAASRKDYFDPLPAPMIDMEEFAKWSFYRAIIAEFVATLLFLYVVVLTVIGNSSQTDPLNGGNVCAGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFLTRKISLVRALLYIIAQCIGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIVGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINNHKVWKDHWIFWVGPLIGSTIAAMYYQYVLRASAVKAIGSFRSSPPTH 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31581885 31583832 + MELO3C009337.2.1 Cme04g02532 326793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02532 289 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Cme04g02532 289 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cme04g02532 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 285 IPR034294 -
Cme04g02532 289 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Cme04g02532 289 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme04g02532 289 PANTHER AQUAPORIN PIP2-4-RELATED 12 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02532 Cme08g02310 CCT
Cme04g02532 Cme08g02310 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02532 Cme-Chr4:31581885 Cme08g02310 Cme-Chr8:30084894 4.08E-162 dispersed
Cme11g00423 Cme-Chr11:4253427 Cme04g02532 Cme-Chr4:31581885 8.47E-18 dispersed
Cme08g02008 Cme-Chr8:25274615 Cme04g02532 Cme-Chr4:31581885 1.80E-13 transposed
Cme10g00071 Cme-Chr10:533417 Cme04g02532 Cme-Chr4:31581885 3.29E-152 wgd
Cme11g01798 Cme-Chr11:26126094 Cme04g02532 Cme-Chr4:31581885 1.41E-152 wgd
Cme04g02532 Cme-Chr4:31581885 Cme08g02309 Cme-Chr8:30079583 1.10E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02532 K09872 - csv:101214142 558.14