Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02534 ATGGGTAACATTGGCAGTTCCGGTTCCAATGCCCGTAGAAGACACGGTAGTCGCCGGAATCACCCAACTCCCCCACCCCCACCACCACCCCAACCCGAAATTACAAGTAATCGATACGTTTTCGCTGCCGCTACGCCTTACCCAACTCAATATCCCAACCATCCCAATCATCCCCCGCCGTATTACCAGTATCCTGGCTACTTTCCACCGCCACCTGGTCCACCGCCTTCCATGCCGATGCCTTTACCGGCGCCTTACGATCACCACCATCGTGGAGGTCATCCCCAGATGGATCCTGCTCATTGGGTTGGTGGGAGATACCCTTATGGCCCTCCTATGCCGCCTCAAACGCCCTATGTTGAGCATCAGAAGGCGGTTACTATACGGAATGATGTTAATCTCAAGAAGGAAACTCTTAAGGTTGAACCTGATGAAGAAAATCCGGGGCAATATCTTGTATCGTTCACGTTCGATGCCACCGTTGCTGGGAGTATCGCCATTTTCTTCTTTGCGAAAGAAGGTGAAGATTGCAACTTGACCGCGGTAAAAGAAGACATTTTTCAACCAGTAACCGTTCATTTTGAGCAGGGGCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCTGAGTTTCTGAAAGTGAATGACACCGATGTCTATCCATTAGTCGTAAAAGCTGAAGCTTCCACAGACACCCAAACTGGCCCAGATGGTACCCCGGTACCTGATCCCATGAATTCTCAAATAACACAAGCAGTGTTTGCGAAAGATAAAGGTGAATATCAGGTAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTACAGGAGATATATGGCATTGGCAATTCAGTTGAGGGCGATGTCGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAGCCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTGCTGAGGTTCCAGACGAATCGATGCCCAATTTGTAGACAACCCGTGGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAAAGTTAA 1107 48.42 MGNIGSSGSNARRRHGSRRNHPTPPPPPPPQPEITSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEENPGQYLVSFTFDATVAGSIAIFFFAKEGEDCNLTAVKEDIFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLVVKAEASTDTQTGPDGTPVPDPMNSQITQAVFAKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEES 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31591441 31594696 + MELO3C009335.2.1 Cme04g02534 326795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02534 368 MobiDBLite consensus disorder prediction 1 40 - -
Cme04g02534 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 367 - -
Cme04g02534 368 SUPERFAMILY RING/U-box 310 356 - -
Cme04g02534 368 SMART ring_2 311 349 IPR001841 -
Cme04g02534 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Cme04g02534 368 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Cme04g02534 368 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Cme04g02534 368 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 310 350 IPR045195 -
Cme04g02534 368 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02534 Cme-Chr4:31591441 Cme06g00646 Cme-Chr6:4160570 6.11E-57 dispersed
Cme04g02534 Cme-Chr4:31591441 Cme11g00163 Cme-Chr11:1744215 2.46E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02534 - - csv:101216150 654.055