Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02537 ATGTCAACTAATCCTTTTTCTCTTCTCTCTTCTACTAACACTTCCTTCCCTCACCAACAAGATGCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCTGCTGCCAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCGAAATCACTCATGGCGACCAATAGATTCATATGTGAAATTTGTAACAAGGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATCGACGAGGGCATAACTTACCGTGGAAGTTGCGACAACGGACAAACAAGGAACCGATTAAGAAGAAGGTGTATATTTGTCCAGAAAAGACGTGTGTCCACCATGATCCGTCGCGAGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCATAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCTACAAATATTCTCAATAATCTAAGAAATGATTCAAATAATATCAATCTTCTTCATCAACAAGCTGATCATCATCAACCTTTGATTGATCATCATCAATCTCTTGGAGATATTTCTGGACTTTCCCAATTCACCAATCATTCAGATCATTTCTTGAGAGATTTTGAGGATCACCAACAAAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCTGCTGAAAATGCAATCAACAACAACAACAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTCGGATCCATAACTGAAAACGGGCTTTCGATGTTGCCAGTGATGGAGAAAGAAGATGTTGAGAATAAGGGAAGTAATAATAATTTTTCTAAAGCTACATCATCGTCGGCAGCTGCGCTGTTATCGGGTCAGTCTTCTCAGTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCAATAATAATAATTCCCCGCTCTTTGGTTCGGGTGCTTTCGGAGTCATGAGTTCTTCATCTTCGTTGTCCTCATCGTCGTCCTCCAATGCAGTAAGCAGCTTGAACTCTTTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTAGCAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATTCCACCAAACGGTAACAACGCTATGAGAAGTAGTGGACAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAGGCACCCCGACCACCATTCCTTCCGCCGGAGCTAGCAAAATTCACCACCATAAACTCAACAATGGGACTAAGCCAATTTGCCGCCAACCACTAA 1494 43.11 MSTNPFSLLSSTNTSFPHQQDANPNPKPKPSAAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNNINLLHQQADHHQPLIDHHQSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINNNNNISNFFGASSSSSNLFGSITENGLSMLPVMEKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSFNKSRSLTMADSVQMIGSNSDLSSNCLSQLLIPPNGNNAMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFTTINSTMGLSQFAANH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31606721 31609889 - MELO3C009332.2.1 Cme04g02537 326798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02537 497 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Cme04g02537 497 Gene3D Classic Zinc Finger 44 116 - -
Cme04g02537 497 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Cme04g02537 497 MobiDBLite consensus disorder prediction 1 26 - -
Cme04g02537 497 Gene3D Classic Zinc Finger 117 199 - -
Cme04g02537 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Cme04g02537 497 PANTHER ZINC FINGER PROTEIN JACKDAW 5 485 IPR033243 GO:0003700
Cme04g02537 497 MobiDBLite consensus disorder prediction 1 49 - -
Cme04g02537 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 485 - -
Cme04g02537 497 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Cme04g02537 497 SMART c2h2final6 142 162 IPR013087 -
Cme04g02537 497 SMART c2h2final6 65 87 IPR013087 -
Cme04g02537 497 SMART c2h2final6 107 137 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02537 Cme-Chr4:31606721 Cme08g00831 Cme-Chr8:5504754 2.18E-114 dispersed
Cme01g02061 Cme-Chr1:29403562 Cme04g02537 Cme-Chr4:31606721 3.10E-07 transposed
Cme10g01333 Cme-Chr10:15114723 Cme04g02537 Cme-Chr4:31606721 4.93E-110 transposed
Cme12g00305 Cme-Chr12:3952902 Cme04g02537 Cme-Chr4:31606721 8.21E-99 transposed
Cme04g02537 Cme-Chr4:31606721 Cme08g02321 Cme-Chr8:30142078 7.72E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41282 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02537 K25870 - csv:101213422 848.195