Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02539 | ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATATGACATAGAAAAGCAGAGAGATCTCAATGTCTCAGGCGACGATGCCTTCGCTCGTCTCTACGCCACTGTTGAAGCTGACATTGAAGCCGCTTTGCAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCCGTGGTGGCGTTGAATGCGGAGATTCGTCGTACGAAGGCTCGATTACTGGAGGAAGTTCCCAAGTTGCAGAGGTTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGAACTGTGACTACCACAAAGAATAACGGGGGCTGGACATCCTCAGCTTCACGGACTGAAATCAAATTTGACTCAGATGGGCGGTTTGATGATGAGTACTTCCAACACACTGAGCAGTCTAGTCAGTTCAGGCAGGAGTATGAAATGAGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAATATGGCACATGATATGAATGAGGAAATAGACAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTGAAGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA | 798 | 44.99 | MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTTTKNNGGWTSSASRTEIKFDSDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 265 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31617200 | 31620910 | - | MELO3C023921.2.1 | Cme04g02539 | 326800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02539 | 265 | Gene3D | - | 170 | 231 | - | - | |
| Cme04g02539 | 265 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
| Cme04g02539 | 265 | CDD | SNARE_Qc | 175 | 230 | - | - | |
| Cme04g02539 | 265 | PANTHER | SYNTAXIN | 1 | 261 | IPR045242 | - | |
| Cme04g02539 | 265 | SUPERFAMILY | SNARE fusion complex | 165 | 230 | - | - | |
| Cme04g02539 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cme04g02539 | 265 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
| Cme04g02539 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - | |
| Cme04g02539 | 265 | PANTHER | SYNTAXIN-73 | 1 | 261 | - | - | |
| Cme04g02539 | 265 | Coils | Coil | 40 | 60 | - | - | |
| Cme04g02539 | 265 | Coils | Coil | 219 | 239 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02539 | Cme-Chr4:31617200 | Cme11g01790 | Cme-Chr11:26079597 | 9.14E-109 | dispersed | |
| Cme04g02538 | Cme-Chr4:31617184 | Cme04g02539 | Cme-Chr4:31617200 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02539 | K08506 | - | csv:101215905 | 504.597 |