Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02542 ATGATGTTGAATTTCTCTACAATATTCTCATCAATTACCTTCACATTACTTCTATTTTCCATTTCCAATACTGTCATTGTCGATTTCATCGCCACCGTCGCTGCCGCGGCCGAATTTGACTTCGGCACTGTTGAACTCAGTAGTTTGAAGCTACTCGGCGATGCCCACTTGAACAACGGGAGCGTGAGGCTCACTCGGGACCTTGCGGTCCCAAATTCCGGCTCCGGTAGAGTCCTTTACGCTAAACCTATCAGATTCCGACAGCCGGGGATTAATTACCTCGCTAGTTTCTCCACATTTTTCTCATTCTCCATTACTAATCTCAACCCGTCGTCGATCGGCGGTGGTTTGGCGTTTGTTATATCCCCGGACGCTGAAACGCTCGGCGGCGCTGGTGGGTTGTTGGGGTTGGCTGACGAGAGGGGATTGGGATTCGTGGCGGTGGAATTTGATACGTTAATGGACGTGGAATTTAAGGACATTAATGGAAACCATGTGGGATTGGATCTGAACGAAATGGTTTCGTTAGAGGTTGAAGATCTTCAGGGAATTGGAGTCGATCTTAAAAGCGGCGATACGGTGAATTCATGGATTAAATACGACGGGTCGGCTCGGATCTTCGAAGTATTTGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTCAATCTCGACCTTGATCCGTATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCGACACAGGGGAGTACGGAAGTTCACAGTGTGGACTGGTGGAGCTTTACGTCGTCATTTGACTCAGATTCGTCATCTGGGTCGGTTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCAAATGTCGTTCGTTCACCGCCGCCGTCGCAACCGCCATCCGGTTCAGATTCCATCACGCAAAAGAACTCCAAGTCCACGTCCTGCCACAATGGGCTCTGCAAGCAAGGCGCTGGCGCGGTGGTCGGAGTTGTGACGGCGGGGGCATTTGTTCTAGCATTATTCGCCGGCGCGTTAATTTGGGTATATTCCAAAAAGATCAAGCGGGTTAAAAAATCGGATTCCCTCGCTTCAGAAATCATCAAAATGCCTAAGGAATTCACTTACAAGGAGCTCAAAATCGCCACCAAATGCTTCAATTCGAACAGAATCATCGGCCATGGAGCTTTTGGGACTGTTTATAAAGGGATTCTTCCGGAAACCGGCGACATTGTGGCGGTGAAACGGTGTAGCCATAGTACACAAGGGAAAAATGAATTCCTATCTGAACTTTCAATCATCGGAACTCTTCGCCACCGGAATTTAGTCCGTCTTCAAGGATGGTGTCACGAGAAAGGCGAAATTTTACTCGTTTACGATTTAATGCCAAATGGGAGTTTAGATAAAGCTCTATTCGAGGCTAGAACACCGCTGCCGTGGCCTCACCGGAGAAAAATCCTTCTGGGCGTCGCTTCCGCTTTAGCCTATTTGCATCAAGAATGTGAAAATCAAGTCATTCACAGGGACGTTAAAACCAGCAACATAATGTTGGATGAAGGATTCAATGCCCGATTAGGCGATTTCGGATTAGCCCGACAAGTAGAGCACGATAAATCCCCAGACGCCACCGTCGCGGCTGGCACAATGGGTTACCTAGCGCCGGAATATCTCCTCACCGGACGAGCTACGGAAAAAACCGACGTGTTTAGCTTTGGCGCCGTCGTTCTCGAAGTGGCTAGTGGCAGACGGCCGATTGAGAAAGAGACCACCGCAGTTGGCGGCGGCGGAAAATTTGGTGCCAACAGTAATTTGGTGGACTGGGTTTGGAGTTTACACCGGGAAGGACGGTTGTTGACGGCAGCTGACGGAAGACTGGGCGGCGAGTTTGAGGAATCAGAAATGAGGAAAGTTTTGTTAGTTGGGTTAGCTTGTTCTCACCCGGATCCGATGACCCGACCCACAATGAGAGGCGTAGTGCAAATGTTAATCGGTGATTCGGAGATTCCGATCGTGCCTCGGTCTAAACCGTCAACGAGCTTCAGTACCGCTCATTTGCTTCTCACTCTACAAGACAGCGTGTCCGATCTCAACGGCATGATAGCCATCTCCACTTCCTCCTCTGAGCATAGCTTCAAAGGGGAGGATTTAATTTCACTCGACGATCGGACGGTGGGAAACCCATGCATTGTTTGA 2184 49.22 MMLNFSTIFSSITFTLLLFSISNTVIVDFIATVAAAAEFDFGTVELSSLKLLGDAHLNNGSVRLTRDLAVPNSGSGRVLYAKPIRFRQPGINYLASFSTFFSFSITNLNPSSIGGGLAFVISPDAETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLEVEDLQGIGVDLKSGDTVNSWIKYDGSARIFEVFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSVDWWSFTSSFDSDSSSGSVPPPPTTTLMNPTANVVRSPPPSQPPSGSDSITQKNSKSTSCHNGLCKQGAGAVVGVVTAGAFVLALFAGALIWVYSKKIKRVKKSDSLASEIIKMPKEFTYKELKIATKCFNSNRIIGHGAFGTVYKGILPETGDIVAVKRCSHSTQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWPHRRKILLGVASALAYLHQECENQVIHRDVKTSNIMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSFGAVVLEVASGRRPIEKETTAVGGGGKFGANSNLVDWVWSLHREGRLLTAADGRLGGEFEESEMRKVLLVGLACSHPDPMTRPTMRGVVQMLIGDSEIPIVPRSKPSTSFSTAHLLLTLQDSVSDLNGMIAISTSSSEHSFKGEDLISLDDRTVGNPCIV 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31637313 31640132 + MELO3C009328.2.1 Cme04g02542 326803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02542 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Cme04g02542 727 Gene3D Transferase(Phosphotransferase) domain 1 459 665 - -
Cme04g02542 727 Gene3D - 35 272 - -
Cme04g02542 727 SUPERFAMILY Protein kinase-like (PK-like) 365 688 IPR011009 -
Cme04g02542 727 CDD lectin_legume_LecRK_Arcelin_ConA 38 257 IPR001220 GO:0030246
Cme04g02542 727 SMART serkin_6 383 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02542 727 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 27 708 - -
Cme04g02542 727 CDD STKc_IRAK 389 659 - -
Cme04g02542 727 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Cme04g02542 727 PANTHER - 27 708 - -
Cme04g02542 727 Pfam Protein kinase domain 384 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02542 727 MobiDBLite consensus disorder prediction 263 308 - -
Cme04g02542 727 MobiDBLite consensus disorder prediction 263 288 - -
Cme04g02542 727 ProSiteProfiles Protein kinase domain profile. 383 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02542 727 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 274 IPR013320 -
Cme04g02542 727 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Cme04g02542 727 Pfam Legume lectin domain 39 266 IPR001220 GO:0030246
Cme04g02542 727 Gene3D Phosphorylase Kinase; domain 1 345 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02542 Cme-Chr4:31637313 Cme06g02769 Cme-Chr6:34941554 0 dispersed
Cme12g00655 Cme-Chr12:12030608 Cme04g02542 Cme-Chr4:31637313 2.12E-18 dispersed
Cme04g02542 Cme-Chr4:31637313 Cme04g02643 Cme-Chr4:32182873 4.31E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64846 PF00069 Pkinase 4.20E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02542 - - csv:101215187 1318.14