Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02557 ATGGAGCAAGCGTTTTCAGACTTCAACATTGCTGGAGATATCTTGGATTTGTACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTCAACCTCATTTCTCAGCTCAGTTTCTTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTGTCGATGATGGTCGTGGTATATTTATTTTGTCAATTGACTTTCAACAATTCCGGAAGATTTGGGATCAACATGATTTTTACATAATGTTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGTGCATAATTTAGAAGATGTCGCAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAATTTGAAGGCGGCATATATTGACAAGTTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAACCCTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGCAAAAGCCATATCACACGCAGCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGCAAAAGCAAAACATTCAATCCCATTCGATCGACGGCTGAAGCAATCGACTTTCAAAAAATACGATTGCAAGAACTCACTAAACCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTCGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAGAACCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCGCAGTCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCAAGAGCAACTGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTAGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCGGATGTCTTTCGTCAAATACTGCAATCCATTTGTCCTTCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTGTTTGGTGGTGTGCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTCAGAGGGGATATTCATGTCATAGTAGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCTGCTGCAGCTATTTCTCCACGTGGTATATATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTTCTGGAAGCCATGGAACAACAATGTGTATCAATTGCAAAAGCCGGACTGGTAGCAAGTCTATCAGCTCGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGATTTGACTTAGTTTTTATATTGCTTGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATGTGGGGAACGTGCCTCTGGAGCAAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGTAGATGCTGGTTCAAAACGCGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCAAAAGATGGAGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTGTTCCCCAGGATGTCAAAGCCCGCAGCAGACATCTTGCAGAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCGGATGGTACACCGATAACAGCAAGGCAACTGGAAAGTTTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTAGAAGATGCAATGGATGTGGTTGAAATAATGAAGGACTCCCTGTACGATAAGTATGTAGATGAGCATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAACGATTTCTGGGTGCACTCAACAAGCAATCTGAGTTGCAGCAGAAAGACTGTTTTTCTATCTCGGAAATATATAGCTTGGCAGATAAGATTGGTCTACGAGTACCTGACATCGATACCTTCGTAGAAAATCTCAATAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCGTACACCAGTCAATCAACAAGGTCAAGAGGGTAA 2382 42.11 MEQAFSDFNIAGDILDLYFPRTVFTVENGWLNLISQLSFFFSSPAGRHLSSQAVDDGRGIFILSIDFQQFRKIWDQHDFYIMLEENPKVALKCMSAAIHQVMRTKWVHNLEDVAKILVRLHNYSESMLALKNLKAAYIDKFVSVRGTVVKVSTVKPLVVQMSFDCAKCKSHITRSFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKPDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGCGERASGAKRLRKDISPLALKNVAMENDGKVDAGSKRESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVEDAMDVVEIMKDSLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLGALNKQSELQQKDCFSISEIYSLADKIGLRVPDIDTFVENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31709004 31715683 + MELO3C009313.2.1 Cme04g02557 326818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02557 793 Coils Coil 451 471 - -
Cme04g02557 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Cme04g02557 793 PANTHER DNA HELICASE MCM8 7 788 - -
Cme04g02557 793 SMART mcm 126 694 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 157 207 - -
Cme04g02557 793 CDD MCM8 340 692 - -
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 314 702 IPR027417 -
Cme04g02557 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Cme04g02557 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 130 260 IPR012340 -
Cme04g02557 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 SMART AAA_5 380 532 IPR003593 -
Cme04g02557 793 Pfam MCM OB domain 130 259 IPR033762 -
Cme04g02557 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02557 Cme-Chr4:31709004 Cme05g01856 Cme-Chr5:27326640 1.92E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02557 K10737 - csv:101211972 1494.18