Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02557 ATGGAGCAAGCGTTTTCAGACTTCAACATTGCTGGAGATATCTTGGATTTGTACTTCCCCCGAACTGTCTTCACTGTCGAAAATGGATGGCTCAACCTCATTTCTCAGCTCAGTTTCTTTTTTTCTTCTCCGGCAGGTCGACATCTCTCTTCACAGGCTGTCGATGATGGTCGTGGTATATTTATTTTGTCAATTGACTTTCAACAATTCCGGAAGATTTGGGATCAACATGATTTTTACATAATGTTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCAATTCATCAGGTAATGAGGACCAAGTGGGTGCATAATTTAGAAGATGTCGCAAAAATTCTAGTCCGATTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAATTTGAAGGCGGCATATATTGACAAGTTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAACCCTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGCAAAAGCCATATCACACGCAGCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGCAAAAGCAAAACATTCAATCCCATTCGATCGACGGCTGAAGCAATCGACTTTCAAAAAATACGATTGCAAGAACTCACTAAACCTGATGATCATGAAGAAGGCAGGGTGCCTCGAACTGTCGAATGTGAACTGACTGAAGATCTAGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTAATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAGAACCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCGCAGTCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCAAGAGCAACTGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTAGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCGGATGTCTTTCGTCAAATACTGCAATCCATTTGTCCTTCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTGTTTGGTGGTGTGCGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTCAGAGGGGATATTCATGTCATAGTAGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCTGCTGCAGCTATTTCTCCACGTGGTATATATGTTTGTGGTAATGCAACAACCAAGGCCGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGTTGTATAGATGAGTTCGATAAAATGTCTGCAGAACATCAGGCCCTTCTGGAAGCCATGGAACAACAATGTGTATCAATTGCAAAAGCCGGACTGGTAGCAAGTCTATCAGCTCGCACTTCTATTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGATTTGACTTAGTTTTTATATTGCTTGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATGTGGGGAACGTGCCTCTGGAGCAAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGAGAATGATGGAAAAGTAGATGCTGGTTCAAAACGCGAGTCTTTAGTTTCAAGACTGAGATTGGACAAAGCAAAAGATGGAGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTGTTCCCCAGGATGTCAAAGCCCGCAGCAGACATCTTGCAGAGATTTTACTTACAACTGCGTGACCAGAATACATCAGCGGATGGTACACCGATAACAGCAAGGCAACTGGAAAGTTTGGTGAGGCTGGCAGAAGCTCGAGCACGAGTAGACCTCAGGGAAGAAATTACAGTAGAAGATGCAATGGATGTGGTTGAAATAATGAAGGACTCCCTGTACGATAAGTATGTAGATGAGCATGGGGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAACGATTTCTGGGTGCACTCAACAAGCAATCTGAGTTGCAGCAGAAAGACTGTTTTTCTATCTCGGAAATATATAGCTTGGCAGATAAGATTGGTCTACGAGTACCTGACATCGATACCTTCGTAGAAAATCTCAATAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCGTACACCAGTCAATCAACAAGGTCAAGAGGGTAA 2382 42.11 MEQAFSDFNIAGDILDLYFPRTVFTVENGWLNLISQLSFFFSSPAGRHLSSQAVDDGRGIFILSIDFQQFRKIWDQHDFYIMLEENPKVALKCMSAAIHQVMRTKWVHNLEDVAKILVRLHNYSESMLALKNLKAAYIDKFVSVRGTVVKVSTVKPLVVQMSFDCAKCKSHITRSFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKPDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQSTPEELQDSNSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSILAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGCGERASGAKRLRKDISPLALKNVAMENDGKVDAGSKRESLVSRLRLDKAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQRFYLQLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVEDAMDVVEIMKDSLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLGALNKQSELQQKDCFSISEIYSLADKIGLRVPDIDTFVENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31709004 31715683 + MELO3C009313.2.1 Cme04g02557 326818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02557 793 Coils Coil 451 471 - -
Cme04g02557 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Cme04g02557 793 PANTHER DNA HELICASE MCM8 7 788 - -
Cme04g02557 793 SMART mcm 126 694 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 157 207 - -
Cme04g02557 793 CDD MCM8 340 692 - -
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 314 702 IPR027417 -
Cme04g02557 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Cme04g02557 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 7 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 Gene3D - 130 260 IPR012340 -
Cme04g02557 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme04g02557 793 SMART AAA_5 380 532 IPR003593 -
Cme04g02557 793 Pfam MCM OB domain 130 259 IPR033762 -
Cme04g02557 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02557 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4] - csv:101211972 1494.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02557 Cme-Chr4:31709004 Cme05g01856 Cme-Chr5:27326640 1.92E-86 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009089 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02557 Cme_Chr04 FPKM 2.843326 3.328899 3.770277 3.484548 13.411408 14.490438 14.683876 6.980934 5.782647 6.009584