Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02561 | ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA | 354 | 44.63 | MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG | 117 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 31731751 | 31735455 | - | MELO3C009309.2.1 | Cme04g02561 | 326822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02561 | 117 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 | 1 | 116 | - | - | |
Cme04g02561 | 117 | SUPERFAMILY | Histone-fold | 27 | 115 | IPR009072 | GO:0046982 | |
Cme04g02561 | 117 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Cme04g02561 | 117 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cme04g02561 | 117 | Gene3D | Histone, subunit A | 17 | 117 | IPR009072 | GO:0046982 | |
Cme04g02561 | 117 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cme04g02561 | 117 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Cme04g02561 | 117 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Cme04g02561 | 117 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cme04g02561 | 117 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 116 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02561 | Cme-Chr4:31731751 | Cme02g00096 | Cme-Chr2:726817 | 2.86E-30 | dispersed | |
Cme06g02755 | Cme-Chr6:34811100 | Cme04g02561 | Cme-Chr4:31731751 | 7.26E-57 | transposed | |
Cme06g02771 | Cme-Chr6:34982615 | Cme04g02561 | Cme-Chr4:31731751 | 2.54E-45 | transposed | |
Cme07g01729 | Cme-Chr7:22788772 | Cme04g02561 | Cme-Chr4:31731751 | 2.12E-58 | transposed | |
Cme11g00968 | Cme-Chr11:13736069 | Cme04g02561 | Cme-Chr4:31731751 | 5.59E-62 | transposed | |
Cme01g02349 | Cme-Chr1:31831207 | Cme04g02561 | Cme-Chr4:31731751 | 1.26E-48 | transposed | |
Cme10g00818 | Cme-Chr10:5367123 | Cme04g02561 | Cme-Chr4:31731751 | 1.22E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41284 | PF00808 | CBFD_NFYB_HMF | 3.00E-28 | CL0012 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02561 | K08065 | - | csv:101212699 | 233.417 |