Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02561 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA 354 44.63 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31731751 31735455 - MELO3C009309.2.1 Cme04g02561 326822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02561 117 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 1 116 - -
Cme04g02561 117 SUPERFAMILY Histone-fold 27 115 IPR009072 GO:0046982
Cme04g02561 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cme04g02561 117 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme04g02561 117 Gene3D Histone, subunit A 17 117 IPR009072 GO:0046982
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cme04g02561 117 MobiDBLite consensus disorder prediction 1 28 - -
Cme04g02561 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02561 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101212699 233.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02561 Cme-Chr4:31731751 Cme02g00096 Cme-Chr2:726817 2.86E-30 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme04g02561 Cme-Chr4:31731751 7.26E-57 transposed
Cme06g02771 Cme-Chr6:34982615 Cme04g02561 Cme-Chr4:31731751 2.54E-45 transposed
Cme07g01729 Cme-Chr7:22788772 Cme04g02561 Cme-Chr4:31731751 2.12E-58 transposed
Cme11g00968 Cme-Chr11:13736069 Cme04g02561 Cme-Chr4:31731751 5.59E-62 transposed
Cme01g02349 Cme-Chr1:31831207 Cme04g02561 Cme-Chr4:31731751 1.26E-48 transposed
Cme10g00818 Cme-Chr10:5367123 Cme04g02561 Cme-Chr4:31731751 1.22E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02771 . 9 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.2 7.4e-48 187.6
Cme11g00968 CCT,ECH 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.0e-38 154.5
Cme06g02771 . 33 171 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.4e-49 193.4
Cme07g01729 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.9 8.4e-39 157.5
Cme11g00968 CCT,ECH 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.5e-57 218.0
Cme06g02755 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Cme07g01729 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.0 2.5e-47 185.3
Cme04g02561 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cme10g00818 . 11 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.5 8.5e-43 170.2
Cme01g02349 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.8e-37 152.5
Cme10g00818 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.7 3.4e-49 191.4
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Cme11g00968 CCT,ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cme06g02755 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.9e-42 166.8
Cme07g01729 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.8 8.9e-42 166.8
Cme01g02349 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Cme01g02349 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 9.9e-44 173.3
Cme06g02755 . 19 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.5 1.1e-39 159.8
Cme11g00968 CCT,ECH 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.6e-39 157.5
Cme07g01729 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 1.4e-37 152.9
Cme10g00818 . 1 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.3 2.3e-54 208.8
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.9 1.7e-49 192.6
Cme11g00968 CCT,ECH 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cme07g01729 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.5 1.7e-41 166.0
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.5e-41 164.1
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.5e-37 150.6
Cme07g01729 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.2 4.1e-45 178.3
Cme11g00968 CCT,ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.5e-44 175.3
Cme04g02561 . 7 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.4 7.3e-42 167.5
Cme06g02755 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Cme01g02349 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.0e-39 159.5
Cme10g00818 . 28 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 5.8e-39 157.9
Cme11g00968 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.3e-52 201.1
Cme06g02755 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.9e-50 194.5
Cme07g01729 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 2.1e-45 179.1
Cme10g00818 . 14 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 67.9 2.4e-44 175.6
Cme04g02561 . 11 115 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 6.5e-42 167.5
Cme01g02349 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.1e-38 156.8
Cme10g00818 . 12 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.7 6.8e-54 207.2
Cme04g02561 . 12 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 89.6 1.1e-48 189.9
Cme11g00968 CCT,ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.6e-45 178.7
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Cme07g01729 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 2.3e-41 165.6
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.5e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41284 PF00808 CBFD_NFYB_HMF 3.00E-28 CL0012 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02561 Cme_Chr04 FPKM 28.978682 35.952106 36.064671 36.973789 27.212976 28.381132 30.058285 64.2929 63.086067 63.71896