Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02561 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACAGGGTGA 354 44.63 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETG 117
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 31731751 31735455 - MELO3C009309.2.1 Cme04g02561 326822
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02561 117 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 1 116 - -
Cme04g02561 117 SUPERFAMILY Histone-fold 27 115 IPR009072 GO:0046982
Cme04g02561 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cme04g02561 117 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme04g02561 117 Gene3D Histone, subunit A 17 117 IPR009072 GO:0046982
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cme04g02561 117 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cme04g02561 117 MobiDBLite consensus disorder prediction 1 28 - -
Cme04g02561 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02561 Cme-Chr4:31731751 Cme02g00096 Cme-Chr2:726817 2.86E-30 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme04g02561 Cme-Chr4:31731751 7.26E-57 transposed
Cme06g02771 Cme-Chr6:34982615 Cme04g02561 Cme-Chr4:31731751 2.54E-45 transposed
Cme07g01729 Cme-Chr7:22788772 Cme04g02561 Cme-Chr4:31731751 2.12E-58 transposed
Cme11g00968 Cme-Chr11:13736069 Cme04g02561 Cme-Chr4:31731751 5.59E-62 transposed
Cme01g02349 Cme-Chr1:31831207 Cme04g02561 Cme-Chr4:31731751 1.26E-48 transposed
Cme10g00818 Cme-Chr10:5367123 Cme04g02561 Cme-Chr4:31731751 1.22E-70 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41284 PF00808 CBFD_NFYB_HMF 3.00E-28 CL0012 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02561 K08065 - csv:101212699 233.417