Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02562 ATGGACGCTAAGCTTTTGCTTCTGCTTCTTCTCTTTCTTTTCGACGTCTCCTTTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACCGATGATATTGGTCTTGAGTGGGATCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAAACAAGGAAACAATATATGACTTTAAGACACTTCCCTGCTGATTCGAGGAAGTACTGTTACTCACTTAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATACGGTAATTTTGACAACAACAATGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCAACTCCTACTGTAAGCGTATGTTTGTCGAATGCTACTACTGGGCAGCCATTCATATCCACGCTCGAGCTTCGGCAGTTTAATGGTTCTGTCTATTACACTCAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCGGAAGCTCCAGTAAGGTATCCTGATGATCCTTTTGACCGGATGTGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACGGAAAAGGTTTCCACTAAATTGCCAATAGATGTAGATAGAGATGAAAGACCACCTCCAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAACTTGGATGGCTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGAAATCAGCAAAGCTGTAGTCAACATTGAGGAAAATGCTCAAGGAAAATATCGACTTTATGAGCCTGGTTTCACCAACTTAACCTTACCGTTTGTTTTATCTTTTCGGTTTGGTAAAACATCAGATTCTTCATTGGGACCTCTGCTAAACGCTATGGAGATTAACAAGTATCTAGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCATCAGATTGGGACGAAGGTGGCGATCCATGCTTGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACAGCCAAGAATAATTAAAATTTCATTGTCCAAACAGAATTTGTCGGGGAACATACCTACAGACCTTGCAAAGTTGAGCGGTTTAGTCGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCATGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGCAAGTCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAGTAAAAACCTAGTCCTTGACTACTCTGGAAACATTAATCTTCACGAAGGGGGAAAAAGGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTTCTGCTGTTAGCTACTGTGGTATCTTGCTACTTCTTGCATAAAGGAAGACGAAGATATCATGAGCAAGATCTACCTGAAGAATCCTTGGCTGTACAAAGATTTGTCTCGTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTAATGAAATTGTCCAAGCAACGAAAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTCCAGGGAAGGCGAGAATTTGCAAATGAGGTCACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTGCCAAGAACAAGACAGAAGTATGCTTATCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTAAGCCCCATGTCATTTTTGCAGTGAACAATGCAGGTTCTGAAACCAACTGA 2091 40.79 MDAKLLLLLLLFLFDVSFAQMPGFVSLDCGGQESFTDDIGLEWDPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSVYYTQFEDQFYLSVSARINFGADSEAPVRYPDDPFDRMWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPPKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCLPVPWSWLQCNSDPQPRIIKISLSKQNLSGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCMDLKILHLENNQLTGELPSSLASLPNLRELYVQNNMLSGTVPSGLLSKNLVLDYSGNINLHEGGKRNHVYIIVGSVIGAVVLLLATVVSCYFLHKGRRRYHEQDLPEESLAVQRFVSSKGDAPKETAHCFSVNEIVQATKDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYCQEQDRSMLIYEFMHNGTLKEHLYGKPHVIFAVNNAGSETN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31739714 31747610 - MELO3C009308.2.1 Cme04g02562 326823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02562 696 Pfam Malectin-like domain 27 357 IPR024788 -
Cme04g02562 696 Pfam Protein tyrosine and serine/threonine kinase 595 680 IPR001245 GO:0004672|GO:0006468
Cme04g02562 696 SUPERFAMILY L domain-like 394 510 - -
Cme04g02562 696 Gene3D Ribonuclease Inhibitor 372 518 IPR032675 -
Cme04g02562 696 PANTHER OS07G0107800 PROTEIN-RELATED 10 680 - -
Cme04g02562 696 ProSiteProfiles Protein kinase domain profile. 593 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02562 696 Gene3D Transferase(Phosphotransferase) domain 1 573 685 - -
Cme04g02562 696 SUPERFAMILY Protein kinase-like (PK-like) 578 683 IPR011009 -
Cme04g02562 696 PANTHER TYROSINE KINASE DOMAIN PROTEIN 10 680 - -
Cme04g02562 696 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02562 Cme-Chr4:31739714 Cme10g00619 Cme-Chr10:3947099 0 dispersed
Cme04g02562 Cme-Chr4:31739714 Cme04g01159 Cme-Chr4:15829451 1.62E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64847 PF12819 Malectin_like 8.00E-76 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02562 - - csv:101212456 1342.79