Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02563 ATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGACAGGTTTATGCAGTTTTCGGCGAATAGAATGGAAAGCGCCGGTAGCTTTAACTCGTCCTCTGTCGTTAACGGCGATCTTTCCGCTAGTACCACCGGCGACGAGGACTCTTCTTCTAACGCTGACGAGGCGTTTCCGTTTACCTTTGGAAAAGACTACGCGGATCAAGAAAGCTTAACGGCCAAATCACTCTGTGTTTTTGATGACCACCGTGATCAGACGATGGAGCTCTTCCCGCTAACTGGCGGGTTATCTTCTGGTTCGAGTCCGCTGGAAAGGTGCCCGGAGGTTTCTCCGTCGGAATTTAGTTATTGTGGTGGCGCGCCGGAGCGGCGAATACCCGCACCACCGACGCAGCAACAGCATCAGCCGATGAAGAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACTTTTTATCGACGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGTAAACAGGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCACATTCTTCGTCGCCATAGAACTGGATTTTCAAGGGGAAGCTCAAAATACAGAGGCGTTACTCTGCATAAATGTGGGCGGTGGGAAGCTCGTATGGGCCAGTTTTTGGGCAAGAAGGCATACGACAAGGCTGCCTTAAGATGTAATGGTAAGGAGGCTGTTACAAATTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTGACATAGGAGGTCTATTCCTTCTCTGTTTATACAATTTGCTATTTGATCATTGTCATTTTGTCGTTCTAGTTCTTAACGACCTCGTTTGGTCGACCGGGTTACACCTAATGATCAGTATTCAGTATAGAAAACTCTCTTTATTTCCTTTATGCAGAGAACAACCAAATTATTGA 1092 46.43 MLDLNLEVVSSESASDSVEMVTDRFMQFSANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFGKDYADQESLTAKSLCVFDDHRDQTMELFPLTGGLSSGSSPLERCPEVSPSEFSYCGGAPERRIPAPPTQQQHQPMKKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHRTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAALRCNGKEAVTNFEPSSYVAEMASETDIGGLFLLCLYNLLFDHCHFVVLVLNDLVWSTGLHLMISIQYRKLSLFPLCREQPNY 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31757832 31760087 - MELO3C009307.2.1 Cme04g02563 326824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02563 363 MobiDBLite consensus disorder prediction 131 161 - -
Cme04g02563 363 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Cme04g02563 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 303 - -
Cme04g02563 363 CDD AP2 159 217 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 SMART rav1_2 252 300 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 303 - -
Cme04g02563 363 MobiDBLite consensus disorder prediction 37 65 - -
Cme04g02563 363 CDD AP2 251 296 IPR001471 GO:0003700|GO:0006355
Cme04g02563 363 Gene3D AP2/ERF domain 251 295 IPR036955 GO:0003700|GO:0006355
Cme04g02563 363 Gene3D AP2/ERF domain 159 217 IPR036955 GO:0003700|GO:0006355
Cme04g02563 363 SUPERFAMILY DNA-binding domain 251 295 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02563 Cme-Chr4:31757832 Cme08g00585 Cme-Chr8:3713741 1.36E-77 dispersed
Cme10g00822 Cme-Chr10:5397762 Cme04g02563 Cme-Chr4:31757832 2.88E-75 wgd
Cme11g01754 Cme-Chr11:25705936 Cme04g02563 Cme-Chr4:31757832 2.65E-89 wgd
Cme04g02563 Cme-Chr4:31757832 Cme08g02331 Cme-Chr8:30217408 2.31E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41285 PF00847 AP2 2.60E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02563 K09284 - csv:101211242 558.91