Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02570 ATGATTTGGATTCCTTGTTCTGGAAATTCAAACAGGAAACTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGACTCGAGTTGATCCGACCAACGGCTGTACTTCAATCAGCCATCTGGTTTTCGAAATCTACTTTGAATTTTCCTCTGCATTGAAGCTGTACGATAAACTTCTTCAGTACAATGGCGATTTCAAGACTGACGGGAAACTAAAGACAAGTTCCTCCTTCAGTGAAACCTCCAAAGGTGGAGGATCTGAACCTATCAAGGCACAGATATTTTCCTTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTAGGAGAAGGAGGTTTTGGTAGAGTTTACAAAGGAAAGTTGGAAAGCATTAATCAGGTCGTGGCAATCAAACAACTCGATCGCAATGGGTTGCAAGGGAACAGAGAATTTCTTGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTTCTAGATTGGAATACAAGAATGAAAATAGCAGCTGGGGCAGCTCGAGGATTGGAATACTTGCACGACAAAGCTAGCCCACCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGACAAAGGTTATCATCCCAAGCTGTCTGATTTTGGATTAGCTAAACTTGGGCCTGTTGGGGATAATACGCATGTATCTACCAGAGTTATGGGTACTTACGGATATTGTGCTCCCGAATATGCAATGACTGGTCAATTAACTCTCAAGTCAGATGTTTATAGCTTTGGTGTTGTTCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCGAAAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTGTTTAAAGACCGTCTGAGATTTGCGCAAATGGCTGATCCAATGCTCAGAGGCCAATACCCTTCAAGGAGTTTATATCAGGCTCTTGCAATTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCTGTGATCGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCTCAAAGATACGACCCTGGTATTATTTTACCCAACGACTCCCCTGGATCTGCCTATACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAACTTAATGGAGGTAGAAGATACGACAGAAATCCAACTAAACGACTATAA 1296 41.51 MIWIPCSGNSNRKLKSKKLKKLESQKTRVDPTNGCTSISHLVFEIYFEFSSALKLYDKLLQYNGDFKTDGKLKTSSSFSETSKGGGSEPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGKLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRSLYQALAIAAMCVQEQPNMRPVIADVVTALSYLASQRYDPGIILPNDSPGSAYTPPRTNRDSDRKLNGGRRYDRNPTKRL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31786326 31789728 + MELO3C009301.2.1 Cme04g02570 326831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02570 431 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cme04g02570 431 SMART serkin_6 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02570 431 MobiDBLite consensus disorder prediction 395 431 - -
Cme04g02570 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cme04g02570 431 CDD STKc_IRAK 113 381 - -
Cme04g02570 431 MobiDBLite consensus disorder prediction 409 431 - -
Cme04g02570 431 Gene3D Transferase(Phosphotransferase) domain 1 184 391 - -
Cme04g02570 431 Pfam Protein tyrosine and serine/threonine kinase 112 380 IPR001245 GO:0004672|GO:0006468
Cme04g02570 431 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Cme04g02570 431 PANTHER OS07G0668900 PROTEIN 1 419 - -
Cme04g02570 431 ProSiteProfiles Protein kinase domain profile. 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02570 431 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 419 - -
Cme04g02570 431 SUPERFAMILY Protein kinase-like (PK-like) 89 379 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02570 Cme-Chr4:31786326 Cme06g00702 Cme-Chr6:4544201 0 dispersed
Cme11g01808 Cme-Chr11:26267265 Cme04g02570 Cme-Chr4:31786326 5.90E-60 dispersed
Cme12g00906 Cme-Chr12:15934595 Cme04g02570 Cme-Chr4:31786326 2.26E-86 dispersed
Cme02g01057 Cme-Chr2:15520220 Cme04g02570 Cme-Chr4:31786326 4.85E-59 transposed
Cme04g01142 Cme-Chr4:15595215 Cme04g02570 Cme-Chr4:31786326 3.23E-64 transposed
Cme09g00937 Cme-Chr9:13117117 Cme04g02570 Cme-Chr4:31786326 2.47E-65 transposed
Cme10g00554 Cme-Chr10:3544303 Cme04g02570 Cme-Chr4:31786326 6.79E-65 transposed
Cme08g00269 Cme-Chr8:1741204 Cme04g02570 Cme-Chr4:31786326 4.03E-46 transposed
Cme10g00828 Cme-Chr10:5472250 Cme04g02570 Cme-Chr4:31786326 0 wgd
Cme11g01750 Cme-Chr11:25640838 Cme04g02570 Cme-Chr4:31786326 3.57E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64848 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02570 - - csv:101211491 733.791