Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02578 ATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGTGATTCAAACGGACGAGTTGATGGATTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATTCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGACCAATCCAGGTCCGCTGGGAACCTTTGTTGGAGTCTATGACGGCCATGGCGGAACTGAAGCTTCACGGTTTGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTACACCAAGACATATCAGAAAATGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAAGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATATGCAATGGACAACTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTTGGGAGAACTGAGAGAGCCACCAGAGAAGTGATTGCCATTCAATTGTCCACAGAACACAACGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATTCTAAAACACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAACAGACCACCTCTCCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCAATCCTCAGTGCAGAACCGTCAATACTAGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTATGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGACATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATATTAGGCCCTCCCCTTGCTCCTTGTCAATCAAGGGAGGAGAAGGTCTCCCCTCGTCGGCAAACTCCTAG 1113 43.94 MVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPLGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINIRPSPCSLSIKGGEGLPSSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31839963 31842377 - MELO3C009297.2.1 Cme04g02578 326839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02578 370 SMART PP2C_4 12 340 IPR001932 -
Cme04g02578 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Cme04g02578 370 Gene3D - 23 349 IPR036457 -
Cme04g02578 370 CDD PP2Cc 32 342 IPR001932 -
Cme04g02578 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Cme04g02578 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Cme04g02578 370 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 364 - -
Cme04g02578 370 Pfam Protein phosphatase 2C 66 311 IPR001932 -
Cme04g02578 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02578 Cme-Chr4:31839963 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme10g00833 Cme-Chr10:5527150 Cme04g02578 Cme-Chr4:31839963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02578 K01102 - csv:101210750 723.005