Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02582 | ATGGAAGAATTAGAACCTCCCTCAGTGATTATGGCCGCCCTCGCCACCCTCTCTCCGCCGCGTCTCACCGATCTCTCCCACTCCATTTTCTCTGAGGTTCACCAACACCGCCGCCGCCTCACCTTCATTCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGTCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGATTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCTTTCCAGTCACCGTCCAAGCTCCTCCCCTACCACCCTTCCACCGCTGCCATCTCCCCTCAAGACCTCGACGCTGCCGTCCTCCTCCTCCTTCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCAATCACCAAATGGCGAGCGACCCTTTGTAGAATCTACTCCGAATCCCTCTTGACGATCTCCGGACTCGCCACCGGCGGTGGAGGGGCTTTGATTCCGTACATTGACACGGTGGTGAGGTGTTGGAAATTCGTGGGGTTTGTTGGTAGTTGCGGAGGGAAGGTCCGGAGAGAGGTGGCGGCGTCACCTATGGCGGTGGTGGAGCTACCGTCAGTAGCGGTGGGCGGTGGCGGTGGGACGGTGGAATGTGTGATATGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTATGTATTTTGCCATGGCTTAGGAAGAGAAACACGTGTCCTTGTTGTAGGTTTCAGCTTCCCACCGATGACGTTTTCGGAGAGATCCAACGGCTATGGGAGATCCTCTTCAAGGTGGGATCCACCATGTGTACATCTGATGGAGATGAATGA | 855 | 56.96 | MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCTSDGDE | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 31852348 | 31853379 | - | MELO3C009295.2.1 | Cme04g02582 | 326843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02582 | 284 | SMART | ring_2 | 210 | 250 | IPR001841 | - | |
| Cme04g02582 | 284 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 280 | - | - | |
| Cme04g02582 | 284 | SUPERFAMILY | RING/U-box | 203 | 257 | - | - | |
| Cme04g02582 | 284 | Pfam | Ring finger domain | 209 | 251 | IPR001841 | - | |
| Cme04g02582 | 284 | ProSiteProfiles | Zinc finger RING-type profile. | 210 | 251 | IPR001841 | - | |
| Cme04g02582 | 284 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC | 3 | 280 | - | - | |
| Cme04g02582 | 284 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 262 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02582 | Cme-Chr4:31852348 | Cme08g02062 | Cme-Chr8:26030741 | 4.33E-14 | dispersed | |
| Cme04g02582 | Cme-Chr4:31852348 | Cme04g02637 | Cme-Chr4:32166057 | 1.97E-13 | transposed | |
| Cme04g02582 | Cme-Chr4:31852348 | Cme10g00909 | Cme-Chr10:6589305 | 3.32E-13 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02582 | - | - | csv:101209757 | 510.375 |