Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02590 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATAATTCCATTTCGAGGTATTCGATCTCGTCGCCGTCGAGAACCCCGGCCTTGACTCCACGCCGTAGCTTCAACGACGCCATGATTGAACAGGCCGTTGAATCTGCGGCCGCGATTGTGATGAAATGGAATCCAGATTCTTCGACTTACGCTAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTTATTAAGCGCGTGAATGATCTTCAAAAAGCCATGCATCTTATGGCTTCTGATGATTCCGTTTCCTCTTCCGATCGCCTTGTTTACGCTCAAGGTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTCTATCAAATTCTCTCCATGAATCGTGCTCATCTAGATCCAGAATCTGTTTCCACTAGATCCTCTCGGTGCTCCACCAGATCAAGCACTTCTGTTGATTTCGACGAAGACGGAACCCTAGACGATGAACTCCAAGTCGTAGAAGATTCCATCTCTGAAGTTGAGCAAATTTCTTCTATTGTCATGGAGGATTTACGAGCCATAGCCGAGTGCATGATCTCCTCTGGCTACGCTAAAGAGTGTGTCAATATGTATAAAGTGATTCGTAAATCGATTATCGACGAAGGTGTGTACCGTCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAATAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTTGCAATTAGAACGTTGTTCGTTGGTGAAAGAATTCTCTGCGATCATGTCTTTTCCTCATCTGAATCCATTAGAGAATCCTGTTTTGCCGATATATCCAGAGAAGGCGCTTTGCTTCTGTTTGGATTTCCCGAACTTGTTGCAAAGAGTAAAAAATCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAATTGGCCGGACATCGAATCCATTTTCTCATCGGAATCCTCATCAGTAGTTCGATCTCAAGCTCTAACCTCACTCACGAAACTGGGCGAGTTAGTTCGTGCCATTGTTATGGATCTCGAATACTCGATTCAGAAAAATTCATCCAAATCGCCTGTTGCTGGTGGAGGCGTTCATTCCTTAACACTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACTGCAACGCTTTGACGGACATTTTCGCCGATTGGACTCCGCCTGAAAAATCATCTCTCGAACATATCTTCTTCAGCAGTACTTCAGAAACCGACGATTCTCAATCGGCTTCTGGAATCTCTTTACGAATGGGATGGCTAATTCTAGTTCTTCTCTGTAAACTCGACAACAAAGCGAAACGCTACAAAGACGTTTCTCTTTCGTATCTGTTCCTAGCTAATAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCCAATCTTCAGTACCTTCTCGGCGACGAGTGGATCGCGAAACAGGAAGTGAAAGTAAGGCAATTCGCAGCTAAGTACGAAGCATTAGCTTGGGGAAGAGTCTTCGATTCCTTGCCGGAGAATCCAACTGAGAAATTCTCACAAGAGGAAGCTAAAGAGATCTTCAGGAACTTCAATATGGCGTTCCAAGAAACTCATCGGAAACAGAAATCCTGCTTCATTCCGGATCCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGAAGAAAGCTCGTTTGGTTCTATGGAGAATTTTACCGAGCGCAAAAAGCTTACGGCGGTGCTAATGAAAAGCCCTACATCAGATTCTCTCCGGAAGACATCGGTAACTACCTTTCGGATCTCTATTTTGAACCGTCCGATTGGGCAAGTGTTTCCACATCATCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCCGGACCCCGTTGA 1926 44.76 MPRKGMRSLLFQFSSPSNNSISRYSISSPSRTPALTPRRSFNDAMIEQAVESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMASDDSVSSSDRLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEDGTLDDELQVVEDSISEVEQISSIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPDIESIFSSESSSVVRSQALTSLTKLGELVRAIVMDLEYSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYCNALTDIFADWTPPEKSSLEHIFFSSTSETDDSQSASGISLRMGWLILVLLCKLDNKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWIAKQEVKVRQFAAKYEALAWGRVFDSLPENPTEKFSQEEAKEIFRNFNMAFQETHRKQKSCFIPDPKLRDEVKLSIGRKLVWFYGEFYRAQKAYGGANEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31896591 31898681 - MELO3C009288.2.1 Cme04g02590 326851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02590 641 Pfam Exo70 exocyst complex subunit 250 611 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme04g02590 641 Gene3D Exocyst complex component Exo70 57 619 - -
Cme04g02590 641 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 624 - -
Cme04g02590 641 SUPERFAMILY Cullin repeat-like 76 613 IPR016159 -
Cme04g02590 641 MobiDBLite consensus disorder prediction 619 641 - -
Cme04g02590 641 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 624 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02590 Cme-Chr4:31896591 Cme12g00256 Cme-Chr12:2931087 0 dispersed
Cme10g00847 Cme-Chr10:5690741 Cme04g02590 Cme-Chr4:31896591 7.37E-159 wgd
Cme11g01259 Cme-Chr11:19404241 Cme04g02590 Cme-Chr4:31896591 0 wgd
Cme04g02590 Cme-Chr4:31896591 Cme08g02366 Cme-Chr8:30572730 6.07E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02590 K07195 - csv:101208543 1154.04