Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02590 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATAATTCCATTTCGAGGTATTCGATCTCGTCGCCGTCGAGAACCCCGGCCTTGACTCCACGCCGTAGCTTCAACGACGCCATGATTGAACAGGCCGTTGAATCTGCGGCCGCGATTGTGATGAAATGGAATCCAGATTCTTCGACTTACGCTAAAGTTACTTCCATGTTCTATGAAGACAAAAGAGAAGCCATGCAGTTTATTAAGCGCGTGAATGATCTTCAAAAAGCCATGCATCTTATGGCTTCTGATGATTCCGTTTCCTCTTCCGATCGCCTTGTTTACGCTCAAGGTTTGATGGAAATCGCCATGAAAAGACTTCAGAAGGAGTTCTATCAAATTCTCTCCATGAATCGTGCTCATCTAGATCCAGAATCTGTTTCCACTAGATCCTCTCGGTGCTCCACCAGATCAAGCACTTCTGTTGATTTCGACGAAGACGGAACCCTAGACGATGAACTCCAAGTCGTAGAAGATTCCATCTCTGAAGTTGAGCAAATTTCTTCTATTGTCATGGAGGATTTACGAGCCATAGCCGAGTGCATGATCTCCTCTGGCTACGCTAAAGAGTGTGTCAATATGTATAAAGTGATTCGTAAATCGATTATCGACGAAGGTGTGTACCGTCTCGGACTTGAGAAATTGAGCGCTTCGAGAATCAATAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTTGCAATTAGAACGTTGTTCGTTGGTGAAAGAATTCTCTGCGATCATGTCTTTTCCTCATCTGAATCCATTAGAGAATCCTGTTTTGCCGATATATCCAGAGAAGGCGCTTTGCTTCTGTTTGGATTTCCCGAACTTGTTGCAAAGAGTAAAAAATCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAATTGGCCGGACATCGAATCCATTTTCTCATCGGAATCCTCATCAGTAGTTCGATCTCAAGCTCTAACCTCACTCACGAAACTGGGCGAGTTAGTTCGTGCCATTGTTATGGATCTCGAATACTCGATTCAGAAAAATTCATCCAAATCGCCTGTTGCTGGTGGAGGCGTTCATTCCTTAACACTTCTCTCGATGAACTACCTCACTTTCCTCGCCGATTACTGCAACGCTTTGACGGACATTTTCGCCGATTGGACTCCGCCTGAAAAATCATCTCTCGAACATATCTTCTTCAGCAGTACTTCAGAAACCGACGATTCTCAATCGGCTTCTGGAATCTCTTTACGAATGGGATGGCTAATTCTAGTTCTTCTCTGTAAACTCGACAACAAAGCGAAACGCTACAAAGACGTTTCTCTTTCGTATCTGTTCCTAGCTAATAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCCAATCTTCAGTACCTTCTCGGCGACGAGTGGATCGCGAAACAGGAAGTGAAAGTAAGGCAATTCGCAGCTAAGTACGAAGCATTAGCTTGGGGAAGAGTCTTCGATTCCTTGCCGGAGAATCCAACTGAGAAATTCTCACAAGAGGAAGCTAAAGAGATCTTCAGGAACTTCAATATGGCGTTCCAAGAAACTCATCGGAAACAGAAATCCTGCTTCATTCCGGATCCAAAGCTTAGAGACGAAGTTAAATTATCAATCGGAAGAAAGCTCGTTTGGTTCTATGGAGAATTTTACCGAGCGCAAAAAGCTTACGGCGGTGCTAATGAAAAGCCCTACATCAGATTCTCTCCGGAAGACATCGGTAACTACCTTTCGGATCTCTATTTTGAACCGTCCGATTGGGCAAGTGTTTCCACATCATCGCCGTCGTCCACCTCCTCCTCTCACCGGCGGGAACCCGGACCCCGTTGA 1926 44.76 MPRKGMRSLLFQFSSPSNNSISRYSISSPSRTPALTPRRSFNDAMIEQAVESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMASDDSVSSSDRLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEDGTLDDELQVVEDSISEVEQISSIVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPDIESIFSSESSSVVRSQALTSLTKLGELVRAIVMDLEYSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYCNALTDIFADWTPPEKSSLEHIFFSSTSETDDSQSASGISLRMGWLILVLLCKLDNKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWIAKQEVKVRQFAAKYEALAWGRVFDSLPENPTEKFSQEEAKEIFRNFNMAFQETHRKQKSCFIPDPKLRDEVKLSIGRKLVWFYGEFYRAQKAYGGANEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31896591 31898681 - MELO3C009288.2.1 Cme04g02590 326851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02590 641 Pfam Exo70 exocyst complex subunit 250 611 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme04g02590 641 Gene3D Exocyst complex component Exo70 57 619 - -
Cme04g02590 641 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 624 - -
Cme04g02590 641 SUPERFAMILY Cullin repeat-like 76 613 IPR016159 -
Cme04g02590 641 MobiDBLite consensus disorder prediction 619 641 - -
Cme04g02590 641 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 624 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02590 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101208543 1154.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02590 Cme-Chr4:31896591 Cme12g00256 Cme-Chr12:2931087 0 dispersed
Cme10g00847 Cme-Chr10:5690741 Cme04g02590 Cme-Chr4:31896591 7.37E-159 wgd
Cme11g01259 Cme-Chr11:19404241 Cme04g02590 Cme-Chr4:31896591 0 wgd
Cme04g02590 Cme-Chr4:31896591 Cme08g02366 Cme-Chr8:30572730 6.07E-172 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02590 Cme_Chr04 FPKM 114.626427 117.116951 89.025635 90.676903 34.301205 32.470711 31.50193 76.920494 81.616653 81.923691