Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02602 ATGGGAGAAGAAGCAGCTGTTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAATGTCTTGATGAAGATACGGAACCCGAGTCTTTGCATAGCAAGAAACAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCCGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGCCTGAGGAGCTAGAAAATACTACCCAAGTTGAGCGTGGGGAACTTACGTCCGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAATAACATGTCTCAAAACGACGTTGATATGTGTGATGTCGACGAGGTTTCTCGGGTTGTGATTGAAGTCCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGATAACAACGGCGCATCCATTTCGGCAGACAAAGTTCATTCTTATGGAAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGGGAAGGTTTTGCTGAGAACAGCAGGTATTCGTTAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTACAAGGTATTATTAACGGCGGAGGTTACATGTGCGGATGTTCAACATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAACCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCATCTGTTAACATGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGGCCAAACCCTAATTTTTCCAATGCAGTCTTGCAACACAAGAAAACGGCAGAGAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTTCTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTCGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGCCACTGTAATCGAGAGATTAGCCCCTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCCGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTTGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTATAACTGCATCTTATAGAGTAGTGAAGAAACTGCGGCATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGTGATCAATGTGAAAGAGAATTCCATGTAGGTTGTCTGCGAGATAGTGGATTATGTGATTTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTCTGAATGGGGCACAAACCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCATGTAGGAAAAGGATTATTAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATTTCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAACGTGCAAAACCTTGTTCTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAAAAGGTGGTGCAGCAGTCGACGTTGTAA 2553 42.58 MGEEAAVLAAVTNEPLGKENASSTELKRDHQCLDEDTEPESLHSKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQPEELENTTQVERGELTSACSGNSSSEDISSDGVRCQNNMSQNDVDMCDVDEVSRVVIEVPKHASSTGIRKITFKFSKKKDNNGASISADKVHSYGNSDRDGKPEPSLLDDACTETSAHSWEGFAENSRYSLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVITASYRVVKKLRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQTIPDSLSDLIIRKHVGKGLLVDGALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQQSTL 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31970247 31978276 - MELO3C009276.2.1 Cme04g02602 326863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02602 850 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 364 847 - -
Cme04g02602 850 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 352 - -
Cme04g02602 850 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 734 822 IPR016181 -
Cme04g02602 850 MobiDBLite consensus disorder prediction 162 187 - -
Cme04g02602 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 637 IPR013083 -
Cme04g02602 850 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Cme04g02602 850 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Cme04g02602 850 MobiDBLite consensus disorder prediction 171 185 - -
Cme04g02602 850 MobiDBLite consensus disorder prediction 21 56 - -
Cme04g02602 850 MobiDBLite consensus disorder prediction 1 85 - -
Cme04g02602 850 Pfam Tify domain binding domain 258 312 IPR032308 -
Cme04g02602 850 Pfam Tify domain binding domain 425 474 IPR032308 -
Cme04g02602 850 Gene3D - 681 845 - -
Cme04g02602 850 SMART PHD_3 570 635 IPR001965 -
Cme04g02602 850 SMART PHD_3 491 532 IPR001965 -
Cme04g02602 850 PANTHER AUTOIMMUNE REGULATOR 364 847 - -
Cme04g02602 850 PANTHER AUTOIMMUNE REGULATOR 33 352 - -
Cme04g02602 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 553 IPR013083 -
Cme04g02602 850 SUPERFAMILY FYVE/PHD zinc finger 593 632 IPR011011 -
Cme04g02602 850 Pfam PHD-finger 491 533 IPR019787 -
Cme04g02602 850 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02472 Cme-Chr4:31223673 Cme04g02602 Cme-Chr4:31970247 1.35E-14 dispersed
Cme04g02602 Cme-Chr4:31970247 Cme11g01852 Cme-Chr11:26693392 1.37E-147 dispersed
Cme01g02078 Cme-Chr1:29606538 Cme04g02602 Cme-Chr4:31970247 8.38E-15 transposed
Cme03g00724 Cme-Chr3:13186319 Cme04g02602 Cme-Chr4:31970247 2.15E-08 transposed
Cme05g00519 Cme-Chr5:4852414 Cme04g02602 Cme-Chr4:31970247 1.87E-32 transposed
Cme07g00544 Cme-Chr7:4534343 Cme04g02602 Cme-Chr4:31970247 1.61E-38 transposed
Cme09g02003 Cme-Chr9:23796938 Cme04g02602 Cme-Chr4:31970247 1.97E-07 transposed
Cme11g01411 Cme-Chr11:20939667 Cme04g02602 Cme-Chr4:31970247 1.87E-13 transposed
Cme10g00876 Cme-Chr10:6131667 Cme04g02602 Cme-Chr4:31970247 4.88E-45 wgd
Cme11g01269 Cme-Chr11:19487711 Cme04g02602 Cme-Chr4:31970247 3.19E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41288 PF16135 TDBD 4.10E-12 No_clan Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02602 - - csv:101207817 1646.33