Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02602 ATGGGAGAAGAAGCAGCTGTTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAATGTCTTGATGAAGATACGGAACCCGAGTCTTTGCATAGCAAGAAACAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCCGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGCCTGAGGAGCTAGAAAATACTACCCAAGTTGAGCGTGGGGAACTTACGTCCGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAATAACATGTCTCAAAACGACGTTGATATGTGTGATGTCGACGAGGTTTCTCGGGTTGTGATTGAAGTCCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGATAACAACGGCGCATCCATTTCGGCAGACAAAGTTCATTCTTATGGAAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGGGAAGGTTTTGCTGAGAACAGCAGGTATTCGTTAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATGAAGCTACAAGGTATTATTAACGGCGGAGGTTACATGTGCGGATGTTCAACATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAACCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCATCTGTTAACATGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGGCCAAACCCTAATTTTTCCAATGCAGTCTTGCAACACAAGAAAACGGCAGAGAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTTCTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTCGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGCCACTGTAATCGAGAGATTAGCCCCTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCCGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTTGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTATAACTGCATCTTATAGAGTAGTGAAGAAACTGCGGCATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGTGATCAATGTGAAAGAGAATTCCATGTAGGTTGTCTGCGAGATAGTGGATTATGTGATTTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTCTGAATGGGGCACAAACCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCATGTAGGAAAAGGATTATTAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATTTCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAACGTGCAAAACCTTGTTCTCCCTGCAGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAAAAGGTGGTGCAGCAGTCGACGTTGTAA 2553 42.58 MGEEAAVLAAVTNEPLGKENASSTELKRDHQCLDEDTEPESLHSKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQPEELENTTQVERGELTSACSGNSSSEDISSDGVRCQNNMSQNDVDMCDVDEVSRVVIEVPKHASSTGIRKITFKFSKKKDNNGASISADKVHSYGNSDRDGKPEPSLLDDACTETSAHSWEGFAENSRYSLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVITASYRVVKKLRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQTIPDSLSDLIIRKHVGKGLLVDGALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVQQSTL 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31970247 31978276 - MELO3C009276.2.1 Cme04g02602 326863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02602 850 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 364 847 - -
Cme04g02602 850 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 352 - -
Cme04g02602 850 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 734 822 IPR016181 -
Cme04g02602 850 MobiDBLite consensus disorder prediction 162 187 - -
Cme04g02602 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 637 IPR013083 -
Cme04g02602 850 SUPERFAMILY FYVE/PHD zinc finger 487 534 IPR011011 -
Cme04g02602 850 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Cme04g02602 850 MobiDBLite consensus disorder prediction 171 185 - -
Cme04g02602 850 MobiDBLite consensus disorder prediction 21 56 - -
Cme04g02602 850 MobiDBLite consensus disorder prediction 1 85 - -
Cme04g02602 850 Pfam Tify domain binding domain 258 312 IPR032308 -
Cme04g02602 850 Pfam Tify domain binding domain 425 474 IPR032308 -
Cme04g02602 850 Gene3D - 681 845 - -
Cme04g02602 850 SMART PHD_3 570 635 IPR001965 -
Cme04g02602 850 SMART PHD_3 491 532 IPR001965 -
Cme04g02602 850 PANTHER AUTOIMMUNE REGULATOR 364 847 - -
Cme04g02602 850 PANTHER AUTOIMMUNE REGULATOR 33 352 - -
Cme04g02602 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 553 IPR013083 -
Cme04g02602 850 SUPERFAMILY FYVE/PHD zinc finger 593 632 IPR011011 -
Cme04g02602 850 Pfam PHD-finger 491 533 IPR019787 -
Cme04g02602 850 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02602 - - - csv:101207817 1646.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02472 Cme-Chr4:31223673 Cme04g02602 Cme-Chr4:31970247 1.35E-14 dispersed
Cme04g02602 Cme-Chr4:31970247 Cme11g01852 Cme-Chr11:26693392 1.37E-147 dispersed
Cme01g02078 Cme-Chr1:29606538 Cme04g02602 Cme-Chr4:31970247 8.38E-15 transposed
Cme03g00724 Cme-Chr3:13186319 Cme04g02602 Cme-Chr4:31970247 2.15E-08 transposed
Cme05g00519 Cme-Chr5:4852414 Cme04g02602 Cme-Chr4:31970247 1.87E-32 transposed
Cme07g00544 Cme-Chr7:4534343 Cme04g02602 Cme-Chr4:31970247 1.61E-38 transposed
Cme09g02003 Cme-Chr9:23796938 Cme04g02602 Cme-Chr4:31970247 1.97E-07 transposed
Cme11g01411 Cme-Chr11:20939667 Cme04g02602 Cme-Chr4:31970247 1.87E-13 transposed
Cme10g00876 Cme-Chr10:6131667 Cme04g02602 Cme-Chr4:31970247 4.88E-45 wgd
Cme11g01269 Cme-Chr11:19487711 Cme04g02602 Cme-Chr4:31970247 3.19E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02472 . 212 933 PHD Transcription Factor Family AT2G36720 54.4 1.9e-225 779.6
Cme04g02602 . 18 845 PHD Transcription Factor Family AT3G53680 53.2 3.2e-250 861.7
Cme10g00876 . 435 564 PHD Transcription Factor Family AT3G53680 53.8 2.5e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41288 PF16135 TDBD 4.10E-12 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02602 Cme_Chr04 FPKM 7.248624 7.159377 10.668483 9.887351 6.819479 8.693896 9.025514 11.587267 10.003229 12.953121