Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02612 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCCTCCAACTGGCAACAGCAAGTCACCCATCAGGTGGGAACTAGTAGTAGCACTGCAGTTAGTTCTCAGCTTCTTCCCCCTCCACCGCCTCCTCCACCACCCCCTCCGCCTCCGCCTCCCCATGGCATCGGTGGTGCTGGTTCGATCCGTCCCGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGACCAACACTAAGTTTTGTTACTTTAACAATTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGGAGGTACTGGACCAGAGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGGTGCCGGAGGAACAAAAGAACCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACGAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTTAGTGACTTTGACATCGGCAGTTACAGCTACGGGGGTGGTCTCTCAGCTCCCGCCACCGCTACCGGTGACCTGAATTTCCATTTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAACAATGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGTGGTAATGGTGGCGGCGGAGAAGCACCCGGAACCGGGTGGCCAATGAGGCCAAAAGTACCATCAAGGAATAATTTAACCCAAATGGGGAATTCGGTGAAAATGGAAGAAACCCCGGATCAAGTTAATAATAATGTTGGAAGACAACTTATTGGGAATAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1023 50.24 MNFSSIPPYLDPSNWQQQVTHQVGTSSSTAVSSQLLPPPPPPPPPPPPPPPHGIGGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGSYSYGGGLSAPATATGDLNFHLGNTNLGGGTSIGSLLGFDQQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEAPGTGWPMRPKVPSRNNLTQMGNSVKMEETPDQVNNNVGRQLIGNNEQYWSSGSMAWSDLSGFSSSSSTRNPL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32047295 32048940 - MELO3C009265.2.1 Cme04g02612 326873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02612 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 336 IPR045174 GO:0003700|GO:0006355
Cme04g02612 340 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 336 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 139 174 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 1 62 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 34 55 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 122 180 - -
Cme04g02612 340 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 MobiDBLite consensus disorder prediction 259 286 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 1 33 - -
Cme04g02612 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 48 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02612 Cme08g02396 CCT
Cme04g02612 Cme08g02396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02612 Cme-Chr4:32047295 Cme12g00200 Cme-Chr12:2069742 1.71E-62 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme04g02612 Cme-Chr4:32047295 1.21E-55 wgd
Cme11g01283 Cme-Chr11:19582850 Cme04g02612 Cme-Chr4:32047295 1.33E-46 wgd
Cme04g02612 Cme-Chr4:32047295 Cme08g02396 Cme-Chr8:30824290 9.12E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41289 PF02701 zf-Dof 4.20E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02612 - - csv:101207082 558.14