Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02612 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCCTCCAACTGGCAACAGCAAGTCACCCATCAGGTGGGAACTAGTAGTAGCACTGCAGTTAGTTCTCAGCTTCTTCCCCCTCCACCGCCTCCTCCACCACCCCCTCCGCCTCCGCCTCCCCATGGCATCGGTGGTGCTGGTTCGATCCGTCCCGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGACCAACACTAAGTTTTGTTACTTTAACAATTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGGAGGTACTGGACCAGAGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGGTGCCGGAGGAACAAAAGAACCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACGAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTTAGTGACTTTGACATCGGCAGTTACAGCTACGGGGGTGGTCTCTCAGCTCCCGCCACCGCTACCGGTGACCTGAATTTCCATTTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAACAATGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGTGGTAATGGTGGCGGCGGAGAAGCACCCGGAACCGGGTGGCCAATGAGGCCAAAAGTACCATCAAGGAATAATTTAACCCAAATGGGGAATTCGGTGAAAATGGAAGAAACCCCGGATCAAGTTAATAATAATGTTGGAAGACAACTTATTGGGAATAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1023 50.24 MNFSSIPPYLDPSNWQQQVTHQVGTSSSTAVSSQLLPPPPPPPPPPPPPPPHGIGGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGSYSYGGGLSAPATATGDLNFHLGNTNLGGGTSIGSLLGFDQQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEAPGTGWPMRPKVPSRNNLTQMGNSVKMEETPDQVNNNVGRQLIGNNEQYWSSGSMAWSDLSGFSSSSSTRNPL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32047295 32048940 - MELO3C009265.2.1 Cme04g02612 326873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02612 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 336 IPR045174 GO:0003700|GO:0006355
Cme04g02612 340 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 336 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 139 174 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 1 62 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 34 55 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 122 180 - -
Cme04g02612 340 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Cme04g02612 340 MobiDBLite consensus disorder prediction 259 286 - -
Cme04g02612 340 MobiDBLite consensus disorder prediction 1 33 - -
Cme04g02612 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02612 - - - csv:101207082 558.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme04g02612 Cme08g02396 CCT
Cme04g02612 Cme08g02396 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02612 Cme-Chr4:32047295 Cme12g00200 Cme-Chr12:2069742 1.71E-62 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme04g02612 Cme-Chr4:32047295 1.21E-55 wgd
Cme11g01283 Cme-Chr11:19582850 Cme04g02612 Cme-Chr4:32047295 1.33E-46 wgd
Cme04g02612 Cme-Chr4:32047295 Cme08g02396 Cme-Chr8:30824290 9.12E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41289 PF02701 zf-Dof 4.20E-32 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02612 Cme_Chr04 FPKM 12.241888 11.267978 10.657362 12.119193 12.795122 6.906971 9.960691 18.602777 15.115625 18.735783