Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02627 ATGACCCCAGATAGAGAACTTAGAAAGTCGGGTCGGTACATAGATAATCGTCCTTTTGGGATTCAAGCAGAAGAGGGCACCCATGGGAGGCCTAGATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCTAATCCATCACCGAGCAACGTAGCCTCAAGTTCCAGCATTAGAACCTCATCTTCTAATGATGCAAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAAATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAGTCATTCTATGAGGTCCTCGGAAAAAAGTATCCTCCTTCCCCTGAGGTAAATACATCTCTGGCCAATCAATACACTGATAGCTTGAACGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAGTAATTACGGCAGTACTTCTAATCATGGCGATGATGACCCTCAAACTCTGAGTGATGTATTTCAAATCAGAAGCGCTTTAGGTGATACCATATCTCCGTCATCTAATAGTTCCTCAAATAGTATAATTAGTGGGGGTGATGGGTGGGTGGACTTCTCTAATAATACAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCAATTTGGCAGTTTCAAAAAGGCTTTGAAGAGGCAAGCAAATTTTTACCTGGGGGAAATAAATTGCGTCTTGATTTTGAGGTAAACGGGTCAGCAACTCAGGGTCCCGATGAGGGTACGAGCCAAATATATTTGAAGGCAGCTAGAAAGGATCAGAGGAATGTTTTGTCACTTGAATCACGTGGTAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAGGAGAGAAGCAGCAAGCAAGCAGCCGTATTTGCAGAGTCGCCTTTGCGATCCAAGATGTTTGATATTGTGTTGCTTTGTAGTGCCGGAGAGGGACATGAGCGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGTATGCTGCAGAGTGGGCAGCTAAAAGTGTCTAATGGTGGTAGGGGTCGTCGGAAGAAGCAGAGTGCGAAGAAAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGTGATGGAAGTCAGAGGTTAGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGGTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGGACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGGTTGCTGCAGAGAGTGCAACTAGGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGCCCTGCAGAGAGAGTTGAGGAGACAGGTCGCCGTTTGGCGGCTTATGCAGAGAGTTTCAATGTGCCATTCGAGTATAATGCTATAGCAAAAAAATGGGAAACTGTTACTGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTACTTGATGAGAGTGTTTCTGCAGATAGTGCTAGAAATACTGTTCTTAAATTGGTACACAAAATTAGTCCTAACTTATTCATCAGTGGCATTGTCAATGGGGCATATAATGCTCCGTTCTTTGTTACCCGATTTCGAGAGGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTATGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCGGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTATGCAACTGCCTATTGCTCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCTAGTTACCACAGGGATTTTCTGATTGATGAAGATAGCAGATGGTTACTTCAGGGTTGGAAAGGTCGAATTATATATGCCATCTCTACATGGAAACCTTCTGTAGAGTAA 2262 42.04 MTPDRELRKSGRYIDNRPFGIQAEEGTHGRPRFQNTIFSHNFQEFDCLLPNPSPSNVASSSSIRTSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEVNTSLANQYTDSLNEELCGDSSNYLSNYGSTSNHGDDDPQTLSDVFQIRSALGDTISPSSNSSSNSIISGGDGWVDFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLRLDFEVNGSATQGPDEGTSQIYLKAARKDQRNVLSLESRGRKNPHDENGDLEEERSSKQAAVFAESPLRSKMFDIVLLCSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSAKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMVAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETVTVEDLNIDQDEFLVVNCLYRAKNLLDESVSADSARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFMQLPIAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWKPSVE 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32120122 32122964 + MELO3C009253.2.1 Cme04g02627 326888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02627 753 MobiDBLite consensus disorder prediction 279 306 - -
Cme04g02627 753 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 750 IPR005202 -
Cme04g02627 753 ProSiteProfiles GRAS family profile. 369 749 IPR005202 -
Cme04g02627 753 PANTHER SCARECROW-LIKE PROTEIN 9 37 750 - -
Cme04g02627 753 Pfam GRAS domain family 378 749 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02627 - - - csv:101205887 1440.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02627 Cme-Chr4:32120122 Cme03g00100 Cme-Chr3:1431480 1.22E-67 dispersed
Cme02g02034 Cme-Chr2:26430318 Cme04g02627 Cme-Chr4:32120122 3.37E-56 transposed
Cme06g02786 Cme-Chr6:35108031 Cme04g02627 Cme-Chr4:32120122 2.90E-67 transposed
Cme08g00456 Cme-Chr8:2785012 Cme04g02627 Cme-Chr4:32120122 2.40E-61 transposed
Cme11g00929 Cme-Chr11:12896452 Cme04g02627 Cme-Chr4:32120122 3.06E-73 transposed
Cme11g01318 Cme-Chr11:20006693 Cme04g02627 Cme-Chr4:32120122 0 wgd
Cme12g00163 Cme-Chr12:1573520 Cme04g02627 Cme-Chr4:32120122 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02627 . 74 751 GRAS Transcription Factor Family AT2G37650 54.7 1.8e-198 689.5
Cme12g00163 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 7.2e-126 448.0
Cme08g00635 . 47 467 GRAS Transcription Factor Family AT3G49950 60.1 1.1e-136 483.4
Cme08g02035 . 356 732 GRAS Transcription Factor Family AT5G41920 56.6 3.2e-115 412.1
Cme07g01458 . 1 243 GRAS Transcription Factor Family AT5G41920 72.7 1.9e-99 359.8
Cme08g00842 . 48 652 GRAS Transcription Factor Family AT5G66770 58.4 1.5e-177 619.8
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT5G66770 55.9 1.1e-172 603.6
Cme11g00929 . 57 545 GRAS Transcription Factor Family AT1G50600 59.9 2.8e-164 575.5
Cme06g02786 . 46 544 GRAS Transcription Factor Family AT1G50600 57.7 6.1e-159 557.8
Cme08g00456 . 103 541 GRAS Transcription Factor Family AT1G50600 55.2 3.5e-138 488.8
Cme04g00788 . 202 593 GRAS Transcription Factor Family AT1G50600 57.7 2.2e-132 469.5
Cme09g01376 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.5e-208 722.6
Cme09g00942 . 53 600 GRAS Transcription Factor Family AT1G14920 60.9 1.2e-181 633.3
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 3.3e-152 535.4
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme11g00929 . 19 545 GRAS Transcription Factor Family AT5G48150 66.2 5.5e-194 674.1
Cme06g02786 . 17 544 GRAS Transcription Factor Family AT5G48150 57.4 1.4e-168 589.7
Cme08g00456 . 96 541 GRAS Transcription Factor Family AT5G48150 57.1 9.5e-146 513.8
Cme04g00788 . 128 593 GRAS Transcription Factor Family AT5G48150 53.1 2.3e-136 482.6
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.1e-212 734.9
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT2G01570 62.2 3.1e-188 655.2
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT2G01570 57.6 9.9e-158 553.9
Cme09g00942 . 51 597 GRAS Transcription Factor Family AT1G66350 61.1 1.4e-179 626.3
Cme09g01376 . 1 579 GRAS Transcription Factor Family AT1G66350 56.9 1.5e-173 606.3
Cme06g01579 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 6.6e-158 554.3
Cme09g00942 . 55 598 GRAS Transcription Factor Family AT3G03450 61.5 1.4e-177 619.8
Cme09g01376 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 8.0e-170 594.0
Cme06g01579 . 30 554 GRAS Transcription Factor Family AT3G03450 56.3 3.4e-152 535.4
Cme09g00942 . 44 600 GRAS Transcription Factor Family AT5G17490 56.2 4.7e-159 558.1
Cme09g01376 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Cme06g01579 . 26 554 GRAS Transcription Factor Family AT5G17490 51.5 9.8e-133 470.7
Cme01g00709 . 1 570 GRAS Transcription Factor Family AT1G21450 58.2 1.4e-175 613.2
Cme06g02786 . 168 544 GRAS Transcription Factor Family AT1G21450 51.9 5.4e-111 398.7
Cme04g00788 . 225 593 GRAS Transcription Factor Family AT1G21450 50.8 1.2e-107 387.5
Cme12g00163 . 324 698 GRAS Transcription Factor Family AT5G59450 56.2 4.2e-127 452.2
Cme04g02627 . 302 751 GRAS Transcription Factor Family AT5G59450 50.8 6.7e-125 444.9
Cme08g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 4.9e-172 601.3
Cme11g00929 . 52 545 GRAS Transcription Factor Family AT4G17230 52.8 2.4e-142 502.7
Cme06g02786 . 49 544 GRAS Transcription Factor Family AT4G17230 52.3 1.6e-135 479.9
Cme04g00788 . 220 593 GRAS Transcription Factor Family AT4G17230 51.9 6.9e-110 394.8
Cme11g00929 . 134 545 GRAS Transcription Factor Family AT2G04890 66.1 2.6e-160 562.0
Cme06g02786 . 148 544 GRAS Transcription Factor Family AT2G04890 59.4 1.3e-140 496.5
Cme04g00788 . 206 593 GRAS Transcription Factor Family AT2G04890 56.2 2.8e-127 452.2
Cme08g00456 . 161 541 GRAS Transcription Factor Family AT2G04890 56.7 1.0e-121 433.7
Cme02g00585 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 3.5e-177 618.2
Cme10g00052 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 4.5e-156 548.1
Cme06g02576 . 405 768 GRAS Transcription Factor Family AT4G00150 55.7 3.5e-104 375.9
Cme07g01720 . 1 590 GRAS Transcription Factor Family AT3G50650 51.7 2.3e-153 539.3
Cme08g02035 . 77 730 GRAS Transcription Factor Family AT3G54220 60.1 1.2e-204 709.9
Cme07g01458 . 1 244 GRAS Transcription Factor Family AT3G54220 66.4 2.3e-91 333.6
Cme08g00647 . 90 490 GRAS Transcription Factor Family AT4G37650 67.6 2.1e-159 559.3
Cme11g00273 . 115 507 GRAS Transcription Factor Family AT4G37650 56.5 3.4e-125 445.7
Cme11g02451 . 69 461 GRAS Transcription Factor Family AT4G37650 50.2 3.7e-111 399.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41291 PF03514 GRAS 7.10E-117 CL0063 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02627 Cme_Chr04 FPKM 47.488567 51.779369 51.593094 48.689781 79.850418 72.829788 81.852577 25.045235 30.503803 30.914608