Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02627 ATGACCCCAGATAGAGAACTTAGAAAGTCGGGTCGGTACATAGATAATCGTCCTTTTGGGATTCAAGCAGAAGAGGGCACCCATGGGAGGCCTAGATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCTAATCCATCACCGAGCAACGTAGCCTCAAGTTCCAGCATTAGAACCTCATCTTCTAATGATGCAAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAAATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAGTCATTCTATGAGGTCCTCGGAAAAAAGTATCCTCCTTCCCCTGAGGTAAATACATCTCTGGCCAATCAATACACTGATAGCTTGAACGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAGTAATTACGGCAGTACTTCTAATCATGGCGATGATGACCCTCAAACTCTGAGTGATGTATTTCAAATCAGAAGCGCTTTAGGTGATACCATATCTCCGTCATCTAATAGTTCCTCAAATAGTATAATTAGTGGGGGTGATGGGTGGGTGGACTTCTCTAATAATACAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCAATTTGGCAGTTTCAAAAAGGCTTTGAAGAGGCAAGCAAATTTTTACCTGGGGGAAATAAATTGCGTCTTGATTTTGAGGTAAACGGGTCAGCAACTCAGGGTCCCGATGAGGGTACGAGCCAAATATATTTGAAGGCAGCTAGAAAGGATCAGAGGAATGTTTTGTCACTTGAATCACGTGGTAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAGGAGAGAAGCAGCAAGCAAGCAGCCGTATTTGCAGAGTCGCCTTTGCGATCCAAGATGTTTGATATTGTGTTGCTTTGTAGTGCCGGAGAGGGACATGAGCGGTTAGTTTCATTTCGACAGGAATTACATAATGCTAAAATCAAAAGTATGCTGCAGAGTGGGCAGCTAAAAGTGTCTAATGGTGGTAGGGGTCGTCGGAAGAAGCAGAGTGCGAAGAAAGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGTGATGGAAGTCAGAGGTTAGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGGTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGGACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGGTTGCTGCAGAGAGTGCAACTAGGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGGTTTCGCCCTGCAGAGAGAGTTGAGGAGACAGGTCGCCGTTTGGCGGCTTATGCAGAGAGTTTCAATGTGCCATTCGAGTATAATGCTATAGCAAAAAAATGGGAAACTGTTACTGTCGAAGATCTCAATATCGATCAAGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTACTTGATGAGAGTGTTTCTGCAGATAGTGCTAGAAATACTGTTCTTAAATTGGTACACAAAATTAGTCCTAACTTATTCATCAGTGGCATTGTCAATGGGGCATATAATGCTCCGTTCTTTGTTACCCGATTTCGAGAGGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTATGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCGGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTATGCAACTGCCTATTGCTCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACGGTCTAGTTACCACAGGGATTTTCTGATTGATGAAGATAGCAGATGGTTACTTCAGGGTTGGAAAGGTCGAATTATATATGCCATCTCTACATGGAAACCTTCTGTAGAGTAA 2262 42.04 MTPDRELRKSGRYIDNRPFGIQAEEGTHGRPRFQNTIFSHNFQEFDCLLPNPSPSNVASSSSIRTSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEVNTSLANQYTDSLNEELCGDSSNYLSNYGSTSNHGDDDPQTLSDVFQIRSALGDTISPSSNSSSNSIISGGDGWVDFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLRLDFEVNGSATQGPDEGTSQIYLKAARKDQRNVLSLESRGRKNPHDENGDLEEERSSKQAAVFAESPLRSKMFDIVLLCSAGEGHERLVSFRQELHNAKIKSMLQSGQLKVSNGGRGRRKKQSAKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMVAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETVTVEDLNIDQDEFLVVNCLYRAKNLLDESVSADSARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFMQLPIAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWKPSVE 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32120122 32122964 + MELO3C009253.2.1 Cme04g02627 326888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02627 753 MobiDBLite consensus disorder prediction 279 306 - -
Cme04g02627 753 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 750 IPR005202 -
Cme04g02627 753 ProSiteProfiles GRAS family profile. 369 749 IPR005202 -
Cme04g02627 753 PANTHER SCARECROW-LIKE PROTEIN 9 37 750 - -
Cme04g02627 753 Pfam GRAS domain family 378 749 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02627 Cme-Chr4:32120122 Cme03g00100 Cme-Chr3:1431480 1.22E-67 dispersed
Cme02g02034 Cme-Chr2:26430318 Cme04g02627 Cme-Chr4:32120122 3.37E-56 transposed
Cme06g02786 Cme-Chr6:35108031 Cme04g02627 Cme-Chr4:32120122 2.90E-67 transposed
Cme08g00456 Cme-Chr8:2785012 Cme04g02627 Cme-Chr4:32120122 2.40E-61 transposed
Cme11g00929 Cme-Chr11:12896452 Cme04g02627 Cme-Chr4:32120122 3.06E-73 transposed
Cme11g01318 Cme-Chr11:20006693 Cme04g02627 Cme-Chr4:32120122 0 wgd
Cme12g00163 Cme-Chr12:1573520 Cme04g02627 Cme-Chr4:32120122 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41291 PF03514 GRAS 7.10E-117 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02627 - - csv:101205887 1440.63