Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02643 ATGGCCTCTAATTTTGGTCGTCCCTTACGAAGAAATGGTGCTTATGATGTTCGGTTCCACCGAAGAGAGATGAACAAAAACCCTATGTTTTTTAATCTCTCAATTGTGGTGTCTCTGCTTCTAGTCTCAGTAGTCTCATCAGCTGCTTCTGAAGGTAGTACTGATTTCATCTTCCATGGCTTCCAATCTGCAAATCTATCACTCGATGGTATGGCTGTTGTTACCTCAAATGGCCTCTTGAAACTGACCAACGAGACCAGGCAAAGAATTGGCCATGGGTTTTATCCAAATCCTGTAAATTTTATCAATTTCTCTCATGGCGTTTCATCTTTCTCAACTACTTTTGTCTTTGCCATTATTTCTGAATACCCAAATCTAAGTGGCCATGGGATTGCCTTTGTGGTGGCTCCTACGAAAACTTTCCCCGGAGCTGAGCCAAGTCAGCATCTTGGCCTTTTTAATGGCAACAACAGCGGTAACACAAACAACCATATTTTCGCTGTAGAACTCGACACAATTCTGAATCTAGAGTTGCAAGATATCGATGCGAATCATGTTGGTATAGATATAAATGGGTTGATTTCTAAGAAAGCTGCAACTGCTGGGTTTTATCCTTACAACAATGAGGAATTCAGAAATTTGACTCTTATAAGTGGCCAACCAATGCAAGTTTGGATCGAATATAATGGTATCAACAAAGAAATCAATGTAACTTTAGCACCAATTAACATACCCAAACCCAAGATTCCACTTTTTTCTTACTCCTGGGACCTTTCGTCCGTCATAAAAAACTCTTCCATGTTCGTCGGGTTTTCATCCTCCACTGGCTCTGTTTCAACTTCTCATTATATTTTAGGTTGGAGTTTCGGATTAAACGGACAAGCTCAAAGTCTCGACATTTCTCGTCTTCCAAAGCTGCCTCAGAAAAAACATAGATCCAAAGTTTTAACAATTGGGTTGCCTTTAATTTCTGGAGGGATTGTTTTATTGGTTATTTTAGGCTTTGTTTATGTTATCAGAAGGAAGAGGAAGTTCGCCGAGCTGCTCGAAGATTGGGAGCTTGATTATGGACCTCATAGGTTCAAATACAAAGACTTATACACAGCTACAAATGGATTTAAAGAAAAAGAAATTTTGGGTTCTGGAGGATTTGGACGAGTCTACAAAGGTGTATTACCAAAATCAAAACTTGAAATAGCTGTAAAGAGGGTTTCTCATGAATCAAGACAAGGAATGAAAGAATTTGTAGCTGAGATAGTTAGTCTTGGGAGGCTTCGTCATAGAAACCTTGTACAACTTTTAGGCTACTGTAGACGAAAAGGAGAGCTGCTTTTAGTATATGACTATATGCCAAATGGAAGCTTGGACAAGTACCTGTTTAACGAACCAAATCCAAGTTTGAACTGGAGCCAAAGATTTCGAATCATAAAAGGAGTGGCTTCAGGGCTGCTTTACCTGCATGAAGAATGGGAGCAAATTGTTATTCACAGAGATGTAAAAGCCAGTAATGTCTTACTAGACAATGAGTTAAATGGAAGATTAGGAGATTTCGGTTTGGCAAGACTGTATGACCATGGAACAGACCCTCAAACAACTCATATTGTAGGAACACTCGGATATTTGGCTCCAGAGCACACGAGATCCGGCAGACCGACGACTCAAATGGATGTGTTTGCTTTTGGGGCATTTCTGCTGGAAGTAGCAACAGGAAAGAGGCCAATAGAGATTCGAGGGATGATGGAAGATGTAATATTGGTGGATTGGGTAATGTTATGTTGGATGAGAGGAGCCATTGTTGAGGCCAAAGATCCAAAGTTGGGAACAGAATATGTGACAGAGGAGATGGAAATGGTTCTGAAACTTGGATTGTTGTGTTCACAATCTAATCCAATGGCGAGGCCAAGCATGAGGCAAATTGTGCAGTACTTGGAAGGAGATGCTGTCATGCCAGAGATGGGTTCTATAGAAACATTAGGCGGTGGTGGTGGATTTGAAGGTTTTGATGATCTTGCCATGTCGTATAATTCTTTTTTGGATAAAGCTATTGCATATTCTACTTCTTCATTTGAGAGAGGTTTTGCCCATTCTTCTGATGCGCAGTCTCTTCTGTCAGGTGGCCGTTGA 2124 40.63 MASNFGRPLRRNGAYDVRFHRREMNKNPMFFNLSIVVSLLLVSVVSSAASEGSTDFIFHGFQSANLSLDGMAVVTSNGLLKLTNETRQRIGHGFYPNPVNFINFSHGVSSFSTTFVFAIISEYPNLSGHGIAFVVAPTKTFPGAEPSQHLGLFNGNNSGNTNNHIFAVELDTILNLELQDIDANHVGIDINGLISKKAATAGFYPYNNEEFRNLTLISGQPMQVWIEYNGINKEINVTLAPINIPKPKIPLFSYSWDLSSVIKNSSMFVGFSSSTGSVSTSHYILGWSFGLNGQAQSLDISRLPKLPQKKHRSKVLTIGLPLISGGIVLLVILGFVYVIRRKRKFAELLEDWELDYGPHRFKYKDLYTATNGFKEKEILGSGGFGRVYKGVLPKSKLEIAVKRVSHESRQGMKEFVAEIVSLGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLFNEPNPSLNWSQRFRIIKGVASGLLYLHEEWEQIVIHRDVKASNVLLDNELNGRLGDFGLARLYDHGTDPQTTHIVGTLGYLAPEHTRSGRPTTQMDVFAFGAFLLEVATGKRPIEIRGMMEDVILVDWVMLCWMRGAIVEAKDPKLGTEYVTEEMEMVLKLGLLCSQSNPMARPSMRQIVQYLEGDAVMPEMGSIETLGGGGGFEGFDDLAMSYNSFLDKAIAYSTSSFERGFAHSSDAQSLLSGGR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32182873 32185037 - MELO3C009239.2.1 Cme04g02643 326904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02643 707 SMART serkin_6 373 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02643 707 CDD lectin_legume_LecRK_Arcelin_ConA 54 293 IPR001220 GO:0030246
Cme04g02643 707 SUPERFAMILY Concanavalin A-like lectins/glucanases 53 309 IPR013320 -
Cme04g02643 707 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 37 658 - -
Cme04g02643 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Cme04g02643 707 Pfam Protein kinase domain 373 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02643 707 SUPERFAMILY Protein kinase-like (PK-like) 349 644 IPR011009 -
Cme04g02643 707 Gene3D - 52 304 - -
Cme04g02643 707 CDD STKc_IRAK 379 645 - -
Cme04g02643 707 PANTHER - 37 658 - -
Cme04g02643 707 Gene3D Transferase(Phosphotransferase) domain 1 450 651 - -
Cme04g02643 707 Gene3D Phosphorylase Kinase; domain 1 358 449 - -
Cme04g02643 707 ProSiteProfiles Protein kinase domain profile. 373 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02643 707 ProSitePatterns Protein kinases ATP-binding region signature. 379 402 IPR017441 GO:0005524
Cme04g02643 707 Pfam Legume lectin domain 54 304 IPR001220 GO:0030246
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02643 Cme08g02424 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02643 Cme-Chr4:32182873 Cme04g02645 Cme-Chr4:32188876 0 dispersed
Cme04g02643 Cme-Chr4:32182873 Cme04g02644 Cme-Chr4:32186021 0 tandem
Cme02g02010 Cme-Chr2:26316302 Cme04g02643 Cme-Chr4:32182873 1.68E-173 transposed
Cme03g00384 Cme-Chr3:5333686 Cme04g02643 Cme-Chr4:32182873 2.23E-90 transposed
Cme04g02542 Cme-Chr4:31637313 Cme04g02643 Cme-Chr4:32182873 4.31E-121 transposed
Cme05g00712 Cme-Chr5:8316206 Cme04g02643 Cme-Chr4:32182873 3.53E-60 transposed
Cme06g02769 Cme-Chr6:34941554 Cme04g02643 Cme-Chr4:32182873 2.76E-124 transposed
Cme09g00090 Cme-Chr9:677916 Cme04g02643 Cme-Chr4:32182873 0 transposed
Cme12g01344 Cme-Chr12:21440636 Cme04g02643 Cme-Chr4:32182873 1.76E-156 transposed
Cme04g02643 Cme-Chr4:32182873 Cme08g02424 Cme-Chr8:31130143 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64850 PF00069 Pkinase 1.50E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02643 - - csv:116402748 1264.21