Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02662 ATGGCTGAGGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGTGACAAGCTCCGTGAACATCCCGACCACCACCACCGTTCCAATTTCCTACCTTTTTACGACCCTTCTTCGTCCGACTCTTCCAATCGCTTCCAATTTCACCACCACCCTTTTTTCGACCCCCAAATCCAATCCCCTCTTTTTCCTGAAATCCACTCCTTCCCCACCGAACCTCTTTCCCTTTCCCTCTCCTCTCACCCTAATCTTCTCGCTTCTCCTATTACCCCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTCCTTAAGCCTGCTCATCACTTGCTTCAAGACCTCTGTGATTCTGTTCATTTTTCCTCTTCTTCTTCTTTCATCCATGATCCTTCCTCTGATTCCTTCCCCCATTCTCCAATTCTTGACCATCACTACCCTCTTCCTTCTTCCTCCGATTCTTCTACTCCTCCTCATAAATCAACCCTTCTCTCAATGCTTGATGAGTGTACTGTTACTTCCATATGTACTTTTGATAAATCTGTTGACCAATTTCTTGCTCATGGCTTGTACAACGTTTACAGAAAATATAAGCAGTACTATCAACAAATCCAGGAAGTAATGACATCATTTGAGTACATCTCGGGGCTCGGGAATGCTGCGCCATATGCCAACCAGGCTATAAAAGCCATGTACAAACATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGGTCCGTTCAGAACCCTGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAAAGAGGGCTTCCTGAACGAGCAGTAACTGTTCTACGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAACAAACACAGAAGAATTTACATAAAGAAGACCGAACCACCACCAGAGCAAACGATCATCATCCATCGAACTCGCTCACGGTGGAACACCCTTCTACATCTACTCAACAAATTCAAGACACTCCTCCCAAGCGCACTCGGAATGAACCTCCCGACATGCCAATGGGAAACCAAGACGAACCCTTGAATGTATCCTACAACTTATCAAGCCATCCCCATGTTGGAGCAAACGTAAACATGGCGGGTAACAATGGTGGAGTTTCCTTAACTCTTGGTCTTCATCAGAATAATGGTATAGGTGGCTTTTCTGAACCCTTCCCTGTAGGGTTCCCTGTTGCAGCCACTCGACATTTTGGCCTAGGGATACAAGGAAACAGCGATGGGTATGTGATGGGTGGACATTTTAGTCGAGATGTTCTTGGAGGTCAGCTCTTACATGACTTTGTGGGCTGA 1509 45.59 MAEGIESYDHVPQQSRRDKLREHPDHHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIQSPLFPEIHSFPTEPLSLSLSSHPNLLASPITPPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHFSSSSSFIHDPSSDSFPHSPILDHHYPLPSSSDSSTPPHKSTLLSMLDECTVTSICTFDKSVDQFLAHGLYNVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQQTQKNLHKEDRTTTRANDHHPSNSLTVEHPSTSTQQIQDTPPKRTRNEPPDMPMGNQDEPLNVSYNLSSHPHVGANVNMAGNNGGVSLTLGLHQNNGIGGFSEPFPVGFPVAATRHFGLGIQGNSDGYVMGGHFSRDVLGGQLLHDFVG 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32282406 32286555 - MELO3C009220.2.1 Cme04g02662 326923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02662 502 MobiDBLite consensus disorder prediction 10 32 - -
Cme04g02662 502 MobiDBLite consensus disorder prediction 355 370 - -
Cme04g02662 502 SMART HOX_1 280 344 IPR001356 GO:0003677
Cme04g02662 502 Gene3D - 283 345 - -
Cme04g02662 502 SUPERFAMILY Homeodomain-like 282 347 IPR009057 -
Cme04g02662 502 SMART prehox3 100 251 IPR006563 -
Cme04g02662 502 Pfam Associated with HOX 105 249 IPR006563 -
Cme04g02662 502 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Cme04g02662 502 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 58 466 - -
Cme04g02662 502 MobiDBLite consensus disorder prediction 371 396 - -
Cme04g02662 502 MobiDBLite consensus disorder prediction 352 412 - -
Cme04g02662 502 CDD homeodomain 280 341 IPR001356 GO:0003677
Cme04g02662 502 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 466 - -
Cme04g02662 502 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Cme04g02662 502 MobiDBLite consensus disorder prediction 1 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02662 Cme08g02450 CCT
Cme04g02662 Cme08g02450 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02323 Cme-Chr4:30173085 Cme04g02662 Cme-Chr4:32282406 7.70E-59 dispersed
Cme04g02662 Cme-Chr4:32282406 Cme12g00421 Cme-Chr12:6337581 3.11E-72 dispersed
Cme04g02662 Cme-Chr4:32282406 Cme08g02450 Cme-Chr8:31375544 5.70E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41294 PF07526 POX 2.70E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02662 - - csv:101221128 902.508