Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g02662 | ATGGCTGAGGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGTGACAAGCTCCGTGAACATCCCGACCACCACCACCGTTCCAATTTCCTACCTTTTTACGACCCTTCTTCGTCCGACTCTTCCAATCGCTTCCAATTTCACCACCACCCTTTTTTCGACCCCCAAATCCAATCCCCTCTTTTTCCTGAAATCCACTCCTTCCCCACCGAACCTCTTTCCCTTTCCCTCTCCTCTCACCCTAATCTTCTCGCTTCTCCTATTACCCCTCCTCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTCCTTAAGCCTGCTCATCACTTGCTTCAAGACCTCTGTGATTCTGTTCATTTTTCCTCTTCTTCTTCTTTCATCCATGATCCTTCCTCTGATTCCTTCCCCCATTCTCCAATTCTTGACCATCACTACCCTCTTCCTTCTTCCTCCGATTCTTCTACTCCTCCTCATAAATCAACCCTTCTCTCAATGCTTGATGAGTGTACTGTTACTTCCATATGTACTTTTGATAAATCTGTTGACCAATTTCTTGCTCATGGCTTGTACAACGTTTACAGAAAATATAAGCAGTACTATCAACAAATCCAGGAAGTAATGACATCATTTGAGTACATCTCGGGGCTCGGGAATGCTGCGCCATATGCCAACCAGGCTATAAAAGCCATGTACAAACATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAACTTCAATTCAATAAAAAGACTCATGGTGACTACAATCAAAGGTCCGTTCAGAACCCTGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAAAGAGGGCTTCCTGAACGAGCAGTAACTGTTCTACGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACCAAGCAGCAACAAACACAGAAGAATTTACATAAAGAAGACCGAACCACCACCAGAGCAAACGATCATCATCCATCGAACTCGCTCACGGTGGAACACCCTTCTACATCTACTCAACAAATTCAAGACACTCCTCCCAAGCGCACTCGGAATGAACCTCCCGACATGCCAATGGGAAACCAAGACGAACCCTTGAATGTATCCTACAACTTATCAAGCCATCCCCATGTTGGAGCAAACGTAAACATGGCGGGTAACAATGGTGGAGTTTCCTTAACTCTTGGTCTTCATCAGAATAATGGTATAGGTGGCTTTTCTGAACCCTTCCCTGTAGGGTTCCCTGTTGCAGCCACTCGACATTTTGGCCTAGGGATACAAGGAAACAGCGATGGGTATGTGATGGGTGGACATTTTAGTCGAGATGTTCTTGGAGGTCAGCTCTTACATGACTTTGTGGGCTGA | 1509 | 45.59 | MAEGIESYDHVPQQSRRDKLREHPDHHHRSNFLPFYDPSSSDSSNRFQFHHHPFFDPQIQSPLFPEIHSFPTEPLSLSLSSHPNLLASPITPPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHFSSSSSFIHDPSSDSFPHSPILDHHYPLPSSSDSSTPPHKSTLLSMLDECTVTSICTFDKSVDQFLAHGLYNVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQQTQKNLHKEDRTTTRANDHHPSNSLTVEHPSTSTQQIQDTPPKRTRNEPPDMPMGNQDEPLNVSYNLSSHPHVGANVNMAGNNGGVSLTLGLHQNNGIGGFSEPFPVGFPVAATRHFGLGIQGNSDGYVMGGHFSRDVLGGQLLHDFVG | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 32282406 | 32286555 | - | MELO3C009220.2.1 | Cme04g02662 | 326923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g02662 | 502 | MobiDBLite | consensus disorder prediction | 10 | 32 | - | - | |
Cme04g02662 | 502 | MobiDBLite | consensus disorder prediction | 355 | 370 | - | - | |
Cme04g02662 | 502 | SMART | HOX_1 | 280 | 344 | IPR001356 | GO:0003677 | |
Cme04g02662 | 502 | Gene3D | - | 283 | 345 | - | - | |
Cme04g02662 | 502 | SUPERFAMILY | Homeodomain-like | 282 | 347 | IPR009057 | - | |
Cme04g02662 | 502 | SMART | prehox3 | 100 | 251 | IPR006563 | - | |
Cme04g02662 | 502 | Pfam | Associated with HOX | 105 | 249 | IPR006563 | - | |
Cme04g02662 | 502 | Pfam | Homeobox KN domain | 297 | 336 | IPR008422 | GO:0003677|GO:0006355 | |
Cme04g02662 | 502 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 9 | 58 | 466 | - | - | |
Cme04g02662 | 502 | MobiDBLite | consensus disorder prediction | 371 | 396 | - | - | |
Cme04g02662 | 502 | MobiDBLite | consensus disorder prediction | 352 | 412 | - | - | |
Cme04g02662 | 502 | CDD | homeodomain | 280 | 341 | IPR001356 | GO:0003677 | |
Cme04g02662 | 502 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 58 | 466 | - | - | |
Cme04g02662 | 502 | ProSiteProfiles | 'Homeobox' domain profile. | 277 | 340 | IPR001356 | GO:0003677 | |
Cme04g02662 | 502 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g02662 | Cme08g02450 | CCT | |
Cme04g02662 | Cme08g02450 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02323 | Cme-Chr4:30173085 | Cme04g02662 | Cme-Chr4:32282406 | 7.70E-59 | dispersed | |
Cme04g02662 | Cme-Chr4:32282406 | Cme12g00421 | Cme-Chr12:6337581 | 3.11E-72 | dispersed | |
Cme04g02662 | Cme-Chr4:32282406 | Cme08g02450 | Cme-Chr8:31375544 | 5.70E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41294 | PF07526 | POX | 2.70E-26 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g02662 | - | - | csv:101221128 | 902.508 |