Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02676 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGATTTGAGCGCAGATTGTAGCGTCTATTTCTCTGACGCCGACGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGTTCTTACGACGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTCCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCTGTGGAGGTTGAAAATGAAAATGGGATTACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTAGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGCGAGATTTGTCATTCCATTGCTCGAAATATTCTCGGACCAAATGAGGTTGAGCTAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGATAGCCATAGTTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTCGCTTGTATGGTATTTGCTTTCGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA | 696 | 45.55 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVSQPEVGVVPDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNESNNASSTTTVAASIPSSDSHSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 231 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 32354974 | 32358062 | - | MELO3C009206.2.1 | Cme04g02676 | 326937 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02676 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Cme04g02676 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 231 | - | - | |
| Cme04g02676 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cme04g02676 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Cme04g02676 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Cme04g02676 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Cme04g02676 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Cme04g02676 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
| Cme04g02676 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 231 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02676 | Cme-Chr4:32354974 | Cme12g00294 | Cme-Chr12:3666703 | 1.00E-12 | dispersed | |
| Cme08g01846 | Cme-Chr8:22207544 | Cme04g02676 | Cme-Chr4:32354974 | 1.87E-08 | dispersed | |
| Cme08g00215 | Cme-Chr8:1443557 | Cme04g02676 | Cme-Chr4:32354974 | 4.92E-33 | transposed | |
| Cme12g00362 | Cme-Chr12:5006358 | Cme04g02676 | Cme-Chr4:32354974 | 5.33E-28 | transposed | |
| Cme12g00120 | Cme-Chr12:1245635 | Cme04g02676 | Cme-Chr4:32354974 | 1.74E-52 | wgd | |
| Cme03g00212 | Cme-Chr3:2667375 | Cme04g02676 | Cme-Chr4:32354974 | 1.07E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02676 | - | - | csv:101218915 | 424.861 |