Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02686 ATGCTTCAGATCCGGCTTAGCAAAGTTCCACAGGCTGAAAGTGGTGGTGGGGCAGTGAAGCCCTTGCCGGCGGAGTCTGTGACGGTCGCATGCCCTGACCACCTTGTTCTTGCTGATCTTCCTGTAGCGAAGGGCATTGGTGCGGCTACTGCTGCTTCCATTGTGAAGTCTGTGGGTCGTAGGTCTCGCCGGCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGCGATTTTCCTATTGCAATTTATGGTCGCCTGAGTCCTTGTGACCATGCTTTCTGTCTTGATTGTGCAAGGAGCGATTCTTTATGCTACCTCTGTGATGATCGTATCCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCAGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGACTGAATTTGAATCTCATATACACGAGAGCCATGCTGACCTTCTTAAGCCAAATGCGGACAAGGAAGATGGAAATGAAATTGAGGCTAATAGCGCCAAACAATCTACAGCTTCTGAATCCACCGTCCGAGGTCCATTGAGACCACTCATATCTCCGGGTTCCAATTCCCAGCCTCAAGAACGTGATGAAAAGTTTCATCGACAACAATCTAGAGACCAACCCAGATCTGGTATGCAGCAAAAGCAAACACCAAGTTTTGGAATTCTATCCGATACTCCATATTCTCAGTATCCTCCTTTACAACCAATTCCACCACCAAATTATGTGGTTCCGGCCAACTCCAATCCAATGTTGACTCCCCCTCTGCCATTTGGTTATCCCCCTTTTCCAATTGAGGGAGCACAACAATATTACAATACACCTTATGAAGTATCACGGCAAGACACTGCAGCAGAGACCGGATCTGAGCAAGGGTCACTCCTAGGGTTTCCACCAGGTGCGCCAGGAGGAATGAATTTCTCAGCAACGTATCCACAGTCCTGGAATACTGGGCAAGCTGGCATTCCTTATGAGCATGCTGGTGGAGGTCAAGGAGATTATAGACGCAGCCCTGGACGTATGCCTGTGAATTCTTCAGCAGGTAATGCAATGGACATAAGGGATGGTAAAGGTATATTGGCACCACAGCCTCTAATACAATTGCCTCCACCGCCTCCGCCCCCACCGTACATGTCACATAACAAGCGTGGTAAGTTTTATTCAGGCGATATGGATCATGATGGGCAAAGCCTTGGATGGCAGAATGACAGCCATAGTCGAGATAGCTTTGGAAGTGGCCAAGATTGA 1260 47.78 MLQIRLSKVPQAESGGGAVKPLPAESVTVACPDHLVLADLPVAKGIGAATAASIVKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSLCYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRTEFESHIHESHADLLKPNADKEDGNEIEANSAKQSTASESTVRGPLRPLISPGSNSQPQERDEKFHRQQSRDQPRSGMQQKQTPSFGILSDTPYSQYPPLQPIPPPNYVVPANSNPMLTPPLPFGYPPFPIEGAQQYYNTPYEVSRQDTAAETGSEQGSLLGFPPGAPGGMNFSATYPQSWNTGQAGIPYEHAGGGQGDYRRSPGRMPVNSSAGNAMDIRDGKGILAPQPLIQLPPPPPPPPYMSHNKRGKFYSGDMDHDGQSLGWQNDSHSRDSFGSGQD 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32396194 32398891 + MELO3C009198.2.1 Cme04g02686 326947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02686 419 MobiDBLite consensus disorder prediction 368 383 - -
Cme04g02686 419 MobiDBLite consensus disorder prediction 210 234 - -
Cme04g02686 419 MobiDBLite consensus disorder prediction 366 419 - -
Cme04g02686 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 231 - -
Cme04g02686 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 124 IPR013083 -
Cme04g02686 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 229 387 - -
Cme04g02686 419 MobiDBLite consensus disorder prediction 152 166 - -
Cme04g02686 419 MobiDBLite consensus disorder prediction 152 238 - -
Cme04g02686 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 150 IPR013087 -
Cme04g02686 419 MobiDBLite consensus disorder prediction 399 419 - -
Cme04g02686 419 CDD RING-HC_HAKAI_like 71 107 IPR040380 -
Cme04g02686 419 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Cme04g02686 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 229 387 IPR040383 GO:0016567|GO:0061630
Cme04g02686 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 231 IPR040383 GO:0016567|GO:0061630
Cme04g02686 419 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02686 K15685 - csv:101220422 760.755