Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02710 ATGACGAACAATTCAATTCTGCTTATCCCTGTGGGTAAACTGAGGGATTGGGCATTTGTTTTCATTGCAGCTGATTCGGAATTTCTCAGCTGCAGGATGAGGCAGAATTATTGCTCTAACACCAACAGGATTCTGTGTATACTTCTTTATCATTTATTTTTTATATCCACGACCTTGGCCTTTGCGAAGACAACCATATCTGGAATTGAATCAGATCATTTGGCTCTACTTGATCTGAAAAGTAGAATACTCAACGACCCACTCAAAATCATGAGCTCCTGGAACGATTCCAGGCATTTATGTGATTGGACTGGCATTACTTGTAATTCCACCATTGGAAGAGTTGTGGTCTTGGACTTGGAAGCTCACAAACTGAGTGGTTCGGTACCAACTTCTTTAGGAAATATGACTCATCTCATTGAAATTAGATTGGGAGACAACAGATTCTACGGCCATATTCCCCAAGAATTTGGCCAGCTACTACAGTTACGTCATCTCAATTTGTCTTACAATAACTTCAGTGGCGAGATTCCAGGAAATATAAGTCATTGCACCCAGCTGGTTCATTTGGAGTTGGGTAACAATGGGCTTGAAGGTCAGATTCCACACCAGTTGTTCACGTTAACCAAGTTGAAACGACTCAGTTTTCCCAATAACAATTTGATTGGAACCATCCCATCTTGGATAGGAAACTTTTCTTCCCTCCTTCATTTATCAGTCGCGTACAACAATTTTCAAGGAAACATTCCCAACGAACTCGGGCACCTAAGAAGATTGGAGTTCTTTGCAATTACAGCAAACTATTTGACAGGTACAGTGCCACTTTCACTCTTTAATATAACTTCTTTGACTTTGATGAGTCTTACTGTAAATCGACTACAAGGAACTCTACCACCAAATATCGGATATACATTACCCAATCTTCAGATCTTTGTTGGTGGTGGCAATAATTTCACAGGGTCTATTCCCACGTCGTTTGCCAACATCTCCGGTCTTCGAGAACTAGATCTTCCTAGTAACAGTTTCGTTGGAATGCTACCTAATGATTTGGGGAGCTTAAAGGACTTAGAGAGACTCAATTTTGAAGACAACATACTTGGAAGTGGAAGAGTTGGCGACTTAAATTTTATCAGCTCCTTGGCTAATTGTACTAGTCTAAGGGTTTTGGGTCTGTCTTGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTGGCAACCTTTCAAGCCAGCTCAAAGCGCTAACCTTGGGTGCAAATATGTTAAGTGGAAGCATTCCTTCTGCGATTTTAAACCTGATTAACTTGCAACAACTAGTGGTGGGACAGAATAATTTGAATGGTAGTGTTCCTTCTAATATTGGGAATCTTCAAAACTTGGTGAAGCTATTTTTGCAAGATAATAATTTAACTGGGCCAATTCCATCGTCTATTGGTAACTTGTCTTCGATCGTTAAGCTTTACATGAACGATAACAGACTTGAAGGAAGCATACCAAGAAGCTTGGGAAATTGCAGAACGCTTCAAATCCTTGACCTATCTGGGAACAAACTAAGTGGCTTTATACCAAATGAAGTTCTTCATTTGTCTTCCTTTTTGGCCTATTTGGCCTTGAATAATAACTCACTTACTGGTCCATTACCACTTGAAGTGGATGAGGTGGTTAGTTTGATAACGTTGGATGTATCAAAGAACAAATTATCAGGTAACATTTCTAGCAATCTTGGTAAATGTGTAAGCATGCGTTACTTGGATTTGAGTGGTAACCAATTTGAGGGAACAATTCCTCAATCTTTAGAAACTTTGAAAAGTCTTGAAGTACTAAATCTTTCCAGTAACAAGTTGTCTGGGTCAATTCCCCAATTTCTTGGTAAGCTTCAGTCACTCAAGTATGTCAATCTATCCTATAATAACTTTGAGGGAAAGGTGCCAACAGAAGGAATTTTTTCCAATTCAACCATGATTTCTATCATTGGGAATAATAATCTATGTGATGGTTTACAAGAATTAAATTTACCTCCGTGCAAGCCTAACCAAACACATTTGCCCGATAAGCGGTCTCTAGCATCAAAGGTGTTGATCCCGGTAGTATCTACTGTCACATTCATTGTTATTTTGGTGGGCATACTTTTCGTGTGTTTTGTGTTTAAGAAGTCCAGGAAGGATGTTTCAACTCCACCTTCTACAAAGGAGCTTCTACCACAAATTTCTTATTTAGAACTCAACAAATCAACTAATGGATTCTCCATGGACAATTTGATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTTCAAATGATGGATCTATTGTTGCCGTTAAGGTTCTAAATCTCCAACAACAAGGTGCTTCCAGGAGTTTTGTTGATGAATGCAACACTCTCTCAAACATACGGCATCGGAATCTCCTCAAGATCATAACTTCCTGCTCAAGTATTGATGTACAAGGCAACGAATTCAAAGCATTAGTCTTCAATTTCATGTCCAAGGGAAATCTTGATTGTTGGCTTCATCCTGCAAATCAAGGACACGATCAAAGAAGGTTGAGTCTCCTGCAAAGATTGAATATTGCTATTGATATAGCATGTGGATTAGATTATCTTCATAATTTTTGTGAAACTCCTATTGTTCATTGTGATCTAAAGCCTAGCAACATATTGCTTGACGACGATATGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATACATGTTGGAAGGACCGGATGAACAATTATCTTTTAGTCAAACCATGTCACTTGCACTTAAGGGTTCTATAGGGTATATTCCTCCAGAGTACGGCACTGGTAGCAGAATTTCCATCGAAGGAGATGTCTTCAGCTATGGTATACTACTATTAGAGATGATCATTGGAAAAAGACCCACTGATGACACATTTGGTCATGGTGTGGACATTCATTTGTTCGCTACCATGGGGCTATCTCGAGATGCCTTGGGCATAATCGACCATTCTATGCTGTCAGTAGAAATAGATCAAGAAGAAGAAAGCGAAGACAAGATACAAGAAATAGCGGCAATGAGTGAGGAACAACACAGAAACATCATACCGAGATATGTGGAAGAATGCCTAGTATCGATGATGAGAATCGGATTGTCATGCTCCTTGAGGGCACCTAGGGAGAGAACACCGATGAATGTGGTCGTTAATGAATTGCAAGCAATTAAAAGCTCCTATCTCGAGTTTAAAAAGACACGGCAGAGGTAA 3231 39.52 MTNNSILLIPVGKLRDWAFVFIAADSEFLSCRMRQNYCSNTNRILCILLYHLFFISTTLAFAKTTISGIESDHLALLDLKSRILNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVVVLDLEAHKLSGSVPTSLGNMTHLIEIRLGDNRFYGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLVHLELGNNGLEGQIPHQLFTLTKLKRLSFPNNNLIGTIPSWIGNFSSLLHLSVAYNNFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLFNITSLTLMSLTVNRLQGTLPPNIGYTLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGSGRVGDLNFISSLANCTSLRVLGLSWNHFGGVLPSSIGNLSSQLKALTLGANMLSGSIPSAILNLINLQQLVVGQNNLNGSVPSNIGNLQNLVKLFLQDNNLTGPIPSSIGNLSSIVKLYMNDNRLEGSIPRSLGNCRTLQILDLSGNKLSGFIPNEVLHLSSFLAYLALNNNSLTGPLPLEVDEVVSLITLDVSKNKLSGNISSNLGKCVSMRYLDLSGNQFEGTIPQSLETLKSLEVLNLSSNKLSGSIPQFLGKLQSLKYVNLSYNNFEGKVPTEGIFSNSTMISIIGNNNLCDGLQELNLPPCKPNQTHLPDKRSLASKVLIPVVSTVTFIVILVGILFVCFVFKKSRKDVSTPPSTKELLPQISYLELNKSTNGFSMDNLIGSGSFGSVYKGVLSNDGSIVAVKVLNLQQQGASRSFVDECNTLSNIRHRNLLKIITSCSSIDVQGNEFKALVFNFMSKGNLDCWLHPANQGHDQRRLSLLQRLNIAIDIACGLDYLHNFCETPIVHCDLKPSNILLDDDMVAHVGDFGLARYMLEGPDEQLSFSQTMSLALKGSIGYIPPEYGTGSRISIEGDVFSYGILLLEMIIGKRPTDDTFGHGVDIHLFATMGLSRDALGIIDHSMLSVEIDQEEESEDKIQEIAAMSEEQHRNIIPRYVEECLVSMMRIGLSCSLRAPRERTPMNVVVNELQAIKSSYLEFKKTRQR 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32534364 32548445 + MELO3C009177.2.1 Cme04g02710 326971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02710 1076 Gene3D Ribonuclease Inhibitor 301 372 IPR032675 -
Cme04g02710 1076 SMART serkin_6 747 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02710 1076 Pfam Protein kinase domain 749 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02710 1076 PRINTS Leucine-rich repeat signature 507 520 - -
Cme04g02710 1076 PRINTS Leucine-rich repeat signature 601 614 - -
Cme04g02710 1076 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 69 1064 - -
Cme04g02710 1076 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 69 1064 - -
Cme04g02710 1076 ProSiteProfiles Protein kinase domain profile. 747 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02710 1076 ProSiteProfiles Leucine-rich repeat profile. 603 625 IPR001611 GO:0005515
Cme04g02710 1076 ProSiteProfiles Leucine-rich repeat profile. 506 527 IPR001611 GO:0005515
Cme04g02710 1076 Gene3D Phosphorylase Kinase; domain 1 712 828 - -
Cme04g02710 1076 SUPERFAMILY L domain-like 70 365 - -
Cme04g02710 1076 Gene3D Ribonuclease Inhibitor 373 678 IPR032675 -
Cme04g02710 1076 Gene3D Ribonuclease Inhibitor 71 188 IPR032675 -
Cme04g02710 1076 Gene3D Ribonuclease Inhibitor 189 300 IPR032675 -
Cme04g02710 1076 Pfam Leucine Rich repeat 382 398 IPR001611 GO:0005515
Cme04g02710 1076 Pfam Leucine rich repeat 138 197 IPR001611 GO:0005515
Cme04g02710 1076 Pfam Leucine rich repeat 580 638 IPR001611 GO:0005515
Cme04g02710 1076 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Cme04g02710 1076 SUPERFAMILY Protein kinase-like (PK-like) 719 1060 IPR011009 -
Cme04g02710 1076 ProSitePatterns Serine/Threonine protein kinases active-site signature. 877 889 IPR008271 GO:0004672|GO:0006468
Cme04g02710 1076 Gene3D Transferase(Phosphotransferase) domain 1 829 1075 - -
Cme04g02710 1076 SMART LRR_typ_2 480 504 IPR003591 -
Cme04g02710 1076 SMART LRR_typ_2 432 456 IPR003591 -
Cme04g02710 1076 SMART LRR_typ_2 601 624 IPR003591 -
Cme04g02710 1076 SMART LRR_typ_2 208 232 IPR003591 -
Cme04g02710 1076 SMART LRR_typ_2 625 650 IPR003591 -
Cme04g02710 1076 SMART LRR_typ_2 160 184 IPR003591 -
Cme04g02710 1076 SUPERFAMILY RNI-like 296 649 - -
Cme04g02710 1076 ProSitePatterns Protein kinases ATP-binding region signature. 753 776 IPR017441 GO:0005524
Cme04g02710 1076 Pfam Leucine rich repeat N-terminal domain 70 109 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00927 Cme-Chr2:12940214 Cme04g02710 Cme-Chr4:32534364 6.52E-28 dispersed
Cme03g00245 Cme-Chr3:3142319 Cme04g02710 Cme-Chr4:32534364 0 dispersed
Cme03g02082 Cme-Chr3:28214790 Cme04g02710 Cme-Chr4:32534364 0 dispersed
Cme04g01716 Cme-Chr4:24614150 Cme04g02710 Cme-Chr4:32534364 3.42E-177 dispersed
Cme04g02710 Cme-Chr4:32534364 Cme12g01277 Cme-Chr12:20845844 2.19E-08 dispersed
Cme08g00213 Cme-Chr8:1437366 Cme04g02710 Cme-Chr4:32534364 4.09E-07 dispersed
Cme10g00573 Cme-Chr10:3669809 Cme04g02710 Cme-Chr4:32534364 5.92E-08 dispersed
Cme04g02709 Cme-Chr4:32531221 Cme04g02710 Cme-Chr4:32534364 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64857 PF00069 Pkinase 2.80E-38 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02710 - - cmo:103486310 2132.45