Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02712 ATGACTTCTTGTTGCTTTGCAATCCTGAATTGCCGTAAAGGAAATAGCAGCCTCCAGGAACCGGCAGAAGGGATTGCTGTTACCAACAATGTACGCATCTTTTCTTATAATTCCTTGAGGTCAGCAACTAGGAATTTTCATCCATCAAGCAGAATAGGTGCTGGAGGTTATGGAGTTGTCTACAAAGGGGTTTTAAGGGATGGCACCAATGTTGCAATCAAATCACTGTCTGCAGAATCAACTCAGGGAACTCGGGAATTCTTAACCGAGATAAATATGATCTCAAATATAAGACATCAAAATCTCGTTCAATTGATTGGTTGTTGCATCGAAGGCACACATCGAATTTTGGTGTATGAATACCTGGAAAACAACAGCCTTGCGAGTACTTTGCTTGAAACTATCATTTCAGGTACAATGAGTAAGCATGTTGATCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTTTGGGTCTTGCATTTCTACATGAGGAAGCTGAACCGTCTGTTGTTCATAGAGATATCAAGGCTAGCAATATACTTCTTGACAGAAACTTTGATCCTAAAATAGGAGACTTTGGCTTGGCTAAACTTTTCCCAGACAACGTTACTCATGTGAGCACTCGAGTGGCTGGAACTGTCGGATATTTGGCACCCGAGTATGCACTTTTAGGACAGTTGACAAAGAAAGCAGATGTATACAGTTTTGGTGTGCTCATGCTGGAAGTAATTAGTGGAAGTAGCAGCAGTAAAACAGCATTCGGAGAAGAATTGTCGATTCTCGTGGAATGGACTTGGAAATTAAAACAAGAAGGACGGCTTGTAGAACTAATCGATCCGGAACTCATCGATTATCCGAATGCCGAGGTGATGCGTTTTATCACGGTTGCACTCTTCTGTACCCAAGCCGCTGCAAATCAAAGGCCAAGTATGAAGCAAGTTGTGGAAATGCTTTCAAAAGAGGTACACCTTAATGAAAAACTTTTGACAGAGCCTGGAATATACAAAGGACACAAAACTAGTAAGTTAAATGGCGCTGGCACTAGTTCTGAGGGAACTTTCTCCCGTGGAGACAGAGGTAAAAAGGCTATAAAGTCTACTATATCTTCACCCCAATTTAATAGCTCAAATAGTCTGACTCAAATGCTTCCTAGGTAA 1167 41.47 MTSCCFAILNCRKGNSSLQEPAEGIAVTNNVRIFSYNSLRSATRNFHPSSRIGAGGYGVVYKGVLRDGTNVAIKSLSAESTQGTREFLTEINMISNIRHQNLVQLIGCCIEGTHRILVYEYLENNSLASTLLETIISGTMSKHVDLDWPKRAKICLGTALGLAFLHEEAEPSVVHRDIKASNILLDRNFDPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEVISGSSSSKTAFGEELSILVEWTWKLKQEGRLVELIDPELIDYPNAEVMRFITVALFCTQAAANQRPSMKQVVEMLSKEVHLNEKLLTEPGIYKGHKTSKLNGAGTSSEGTFSRGDRGKKAIKSTISSPQFNSSNSLTQMLPR 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32554892 32558015 - MELO3C009175.2.1 Cme04g02712 326973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02712 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cme04g02712 388 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Cme04g02712 388 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Cme04g02712 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 383 - -
Cme04g02712 388 SUPERFAMILY Protein kinase-like (PK-like) 25 321 IPR011009 -
Cme04g02712 388 CDD STKc_IRAK 52 323 - -
Cme04g02712 388 MobiDBLite consensus disorder prediction 368 388 - -
Cme04g02712 388 Pfam Protein tyrosine and serine/threonine kinase 50 321 IPR001245 GO:0004672|GO:0006468
Cme04g02712 388 MobiDBLite consensus disorder prediction 342 388 - -
Cme04g02712 388 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Cme04g02712 388 SMART serkin_6 46 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02712 388 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 383 - -
Cme04g02712 388 ProSiteProfiles Protein kinase domain profile. 46 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02712 Cme-Chr4:32554892 Cme12g01365 Cme-Chr12:21574748 1.41E-153 dispersed
Cme07g01380 Cme-Chr7:19355066 Cme04g02712 Cme-Chr4:32554892 1.92E-98 dispersed
Cme12g00308 Cme-Chr12:4007837 Cme04g02712 Cme-Chr4:32554892 5.95E-86 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64858 PF07714 PK_Tyr_Ser-Thr 2.90E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02712 - - cmo:103486304 760.37