Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02718 ATGTACTTAATTGGCACTTCCATTTCACAAACCTTGGTTGGGTTCGTTCGTATCTTACTGTGCAGCACTTGCAACAGACACATGGATTTTGAACCAGGAACGACGTCGATCTTGCAAAACGCGGGCGGCGTCAAGAGTTCGCAGAGGCTCGCTCGAATGGCTCACAACATGTCATCGTCATCGTTGCGAAAGAAGTCTGATCTGACCCTCGTCTCCAAGGTTCGTTTCGGTTCCCTCAGACTATTTCTTGTAAATCTTCAAGAGGTCATTTTGGGAACCAGGATTTGGATTCTTTTTCCGGCCGTGCCGTTGGCTGTTTTGGCTGACTCTTTCGGCTTTGCAAGACCATGGGTTTTCGTTGTTAGCTTAATGGGTCTTGCTCCACTTGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCATACTTCACTGGTCCTACAGTTGGTGGGTTGCTAAATGCGACGTGTGGCAATGTGACGGAATTAATCGTAGCAATTTTTGCACTAAGAAAGGAAAAGATTAAGTTGGTCAAATATTCTCTATTGGGATCTCTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCTTTGGCGGCATTCTCAATCTTAACAAACAACAGACCTTTGACTCCAGTCAAGCTGAGGTGAACTCGCACATGCTGATGTTGGCGCTTTTGTGCCACTCTCTACCAATGCTATTCCCTTACGCCGGAGGATCGGTTGACGTGGCAGGAGTTGGTGCGGTGCGATTGTCTAGAGCCTGTAGTATAGTAATGCTGGTTGCATATGTCGCTTACTTGATCTTTCAACTTTGGAGTCATCGCCGATTATTTGAAGCAAACGAGGAATTGGACGTATACGACGACGGCTTAGAAGAAGGTCCGGTGATCGGAAAATGGAGCGCCATGGCTTGGTTGGTGGTTGTCACCCTTCTCGTTGCTTTGTTGTCTGAGTACGTGGTCGCCACAATTGAGGATGCATCGGAAACTTGGGGTTTATCTGTTGCATTCCTTAGCATAATATTGCTGCCATTGGTTGGAAATGCAGCTGAGCATGCAGGTGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGTGTTGCATTAGGATCTGCGACTCAAATAGGAATGTTTGTGGTTCCTTTGTCTGTAATTGTTGCTTGGGTTATGGGAATAAATATGGATCTTAATTTTAATATTATCGAAACTGCCTCCCTTGCTCTCTCAGTATTGGCTTCATCATCCATTTTACAGGATGGTAATTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATATTGTGATTGCAACGTATTTCTTCCTAACTAGTGATGATGTTACTGTCAACAATCTAGGACTGTCAAGCATCAAACTAAAGCAACAATAG 1407 44.28 MYLIGTSISQTLVGFVRILLCSTCNRHMDFEPGTTSILQNAGGVKSSQRLARMAHNMSSSSLRKKSDLTLVSKVRFGSLRLFLVNLQEVILGTRIWILFPAVPLAVLADSFGFARPWVFVVSLMGLAPLAERLSFLTEQISYFTGPTVGGLLNATCGNVTELIVAIFALRKEKIKLVKYSLLGSLLSNLLLVLGTSLFFGGILNLNKQQTFDSSQAEVNSHMLMLALLCHSLPMLFPYAGGSVDVAGVGAVRLSRACSIVMLVAYVAYLIFQLWSHRRLFEANEELDVYDDGLEEGPVIGKWSAMAWLVVVTLLVALLSEYVVATIEDASETWGLSVAFLSIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIGMFVVPLSVIVAWVMGINMDLNFNIIETASLALSVLASSSILQDGNSHYMKGLILLLFYIVIATYFFLTSDDVTVNNLGLSSIKLKQQ 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32580817 32586317 - MELO3C009170.2.1 Cme04g02718 326979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02718 468 TIGRFAM caca2: calcium/proton exchanger 82 447 - -
Cme04g02718 468 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 47 460 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme04g02718 468 TIGRFAM cax: calcium/proton exchanger 100 447 IPR004798 GO:0006816|GO:0015369
Cme04g02718 468 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 47 460 - -
Cme04g02718 468 Gene3D - 291 449 IPR044880 -
Cme04g02718 468 Gene3D - 146 285 IPR044880 -
Cme04g02718 468 Pfam Sodium/calcium exchanger protein 305 447 IPR004837 GO:0016021|GO:0055085
Cme04g02718 468 Pfam Sodium/calcium exchanger protein 117 274 IPR004837 GO:0016021|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02718 Cme08g02585 CCT
Cme04g02718 Cme08g02585 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02718 Cme-Chr4:32580817 Cme11g01002 Cme-Chr11:14304866 2.08E-115 dispersed
Cme06g02728 Cme-Chr6:34485999 Cme04g02718 Cme-Chr4:32580817 3.95E-70 transposed
Cme08g02585 Cme-Chr8:33283309 Cme04g02718 Cme-Chr4:32580817 0 transposed
Cme11g01100 Cme-Chr11:16271810 Cme04g02718 Cme-Chr4:32580817 1.68E-10 transposed
Cme12g00092 Cme-Chr12:924964 Cme04g02718 Cme-Chr4:32580817 1.14E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02718 K07300 - csv:101213176 699.893