Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02724 ATGGAAATTCCTTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACTGCTCGCCGTGCCGCTCTTGTTCGCGCCCTTGCTCACGATGTCGATGAATTCTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTCCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGGCTTAACCGAAACGAAAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCTCTAAGAGATCCAACGATGGGCAGGTGAAAATCAACCCAAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACACAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAAGGCAGACAGTAG 708 45.76 MEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNESLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSSKRSNDGQVKINPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32610893 32613614 + MELO3C009164.2.1 Cme04g02724 326985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02724 235 Pfam Alfin 10 130 IPR021998 GO:0006355|GO:0042393
Cme04g02724 235 SUPERFAMILY FYVE/PHD zinc finger 171 233 IPR011011 -
Cme04g02724 235 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 5 234 - -
Cme04g02724 235 ProSitePatterns Zinc finger PHD-type signature. 182 228 IPR019786 -
Cme04g02724 235 MobiDBLite consensus disorder prediction 136 162 - -
Cme04g02724 235 ProSiteProfiles Zinc finger PHD-type profile. 179 231 IPR019787 -
Cme04g02724 235 CDD PHD_AL_plant 181 231 IPR044104 -
Cme04g02724 235 MobiDBLite consensus disorder prediction 141 162 - -
Cme04g02724 235 Pfam PHD-finger 182 230 IPR019787 -
Cme04g02724 235 PANTHER CPG BINDING PROTEIN 5 234 IPR045104 GO:0006355|GO:0042393
Cme04g02724 235 SMART PHD_3 181 229 IPR001965 -
Cme04g02724 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 229 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02724 Cme-Chr4:32610893 Cme06g02215 Cme-Chr6:28527361 3.92E-83 dispersed
Cme10g01083 Cme-Chr10:9532808 Cme04g02724 Cme-Chr4:32610893 2.08E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41296 PF12165 Alfin 4.20E-60 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02724 - - csv:101211970 448.743