Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02724 ATGGAAATTCCTTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACACTGCTCGCCGTGCCGCTCTTGTTCGCGCCCTTGCTCACGATGTCGATGAATTCTACGGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTCCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGGCTTAACCGAAACGAAAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCTCTAAGAGATCCAACGATGGGCAGGTGAAAATCAACCCAAAACTTGCCGAACAGAGTTGCGAGGAGGATGTCGATGAACACAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAAGGCAGACAGTAG 708 45.76 MEIPSTTPKTVEEIFKDYTARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNESLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSSKRSNDGQVKINPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32610893 32613614 + MELO3C009164.2.1 Cme04g02724 326985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02724 235 Pfam Alfin 10 130 IPR021998 GO:0006355|GO:0042393
Cme04g02724 235 SUPERFAMILY FYVE/PHD zinc finger 171 233 IPR011011 -
Cme04g02724 235 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 5 234 - -
Cme04g02724 235 ProSitePatterns Zinc finger PHD-type signature. 182 228 IPR019786 -
Cme04g02724 235 MobiDBLite consensus disorder prediction 136 162 - -
Cme04g02724 235 ProSiteProfiles Zinc finger PHD-type profile. 179 231 IPR019787 -
Cme04g02724 235 CDD PHD_AL_plant 181 231 IPR044104 -
Cme04g02724 235 MobiDBLite consensus disorder prediction 141 162 - -
Cme04g02724 235 Pfam PHD-finger 182 230 IPR019787 -
Cme04g02724 235 PANTHER CPG BINDING PROTEIN 5 234 IPR045104 GO:0006355|GO:0042393
Cme04g02724 235 SMART PHD_3 181 229 IPR001965 -
Cme04g02724 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 229 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02724 - - - csv:101211970 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02724 Cme-Chr4:32610893 Cme06g02215 Cme-Chr6:28527361 3.92E-83 dispersed
Cme10g01083 Cme-Chr10:9532808 Cme04g02724 Cme-Chr4:32610893 2.08E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02215 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.9e-113 405.6
Cme03g01394 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.1e-96 349.0
Cme01g02823 . 10 251 Alfin-like Transcription Factor Family AT1G14510 66.5 4.1e-92 334.7
Cme10g01083 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 2.8e-77 285.4
Cme04g02724 . 8 232 Alfin-like Transcription Factor Family AT1G14510 58.3 8.5e-74 273.9
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.4e-108 388.7
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT5G26210 65.1 5.0e-98 354.4
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-94 340.5
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 9.5e-81 297.0
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT5G26210 56.5 1.6e-75 279.6
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 4.7e-101 364.4
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT3G42790 63.8 1.7e-95 345.9
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.2e-90 328.9
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 2.4e-81 298.9
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT3G42790 56.3 2.2e-74 275.8
Cme10g01083 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.3e-113 405.2
Cme04g02724 . 1 235 Alfin-like Transcription Factor Family AT5G05610 72.6 2.0e-101 365.5
Cme03g01394 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 1.9e-91 332.4
Cme01g02823 . 10 253 Alfin-like Transcription Factor Family AT5G05610 62.9 8.1e-90 327.0
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Cme10g01083 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 1.1e-96 349.7
Cme04g02724 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.3 7.1e-83 303.9
Cme03g01394 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 1.9e-75 279.3
Cme01g02823 . 44 253 Alfin-like Transcription Factor Family AT3G11200 64.8 5.4e-75 277.7
Cme06g02215 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.6e-69 258.8
Cme06g02215 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cme03g01394 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.3e-65 245.0
Cme01g02823 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 2.3e-63 239.2
Cme10g01083 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Cme04g02724 . 8 130 Alfin-like Transcription Factor Family AT2G02470 70.8 5.6e-49 191.4
Cme03g01394 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.4e-74 273.9
Cme01g02823 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.4e-68 255.4
Cme06g02215 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.6e-67 250.4
Cme10g01083 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Cme04g02724 . 7 152 Alfin-like Transcription Factor Family AT5G20510 59.9 7.9e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41296 PF12165 Alfin 4.20E-60 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02724 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0