Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g02727 | ATGGAAGGCCATCATCATCCCCATCCTCATCCTCCTCATCCGCATCCCCTTATTCAGCTCCATCAACAGCAACAGATTCAACATCCTCCTCCTCCACCACCGCCGCATCTCCACCAGAGCCTCGCCGTCGATCAAGCTGCCACCGGCACAGCCATCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCGGAGCTGGATCAAACCTTCATGGAAACAAAACGAAACAAACTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAATTACAAGCAATATTTGGAGCAAGAAGGGAAAGGATATTATGGGCGGAGGTGGAGAGCGGAGGGAGCGGGTTAAAGAAGAAAATGATGGTATTATCGTCCGATGACGAGGATGAGAACGACGATAGCGATGGCGATGGAGGTGAGACAAAAGTTAGCGGTAGGAAGAGGAAAAAGGTTAAAGGAACGACAATAGGCGGGGCAGAGGGGAGCGGAAAGAGTAGTATGAATGAATTGAAAGAAATATTGGAAGATTTTATGAATCAACAAATGCAAATGGAAATGCAATGGAGAGAAGCATTTGAGGCAAGAGAAAAAGAGAGACAAATGAAAGAAATGGAATGGAGAAGAAATATGGAAGCTTTAGAACATGAAAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGAAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA | 918 | 43.14 | MEGHHHPHPHPPHPHPLIQLHQQQQIQHPPPPPPPHLHQSLAVDQAATGTAIADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARRERILWAEVESGGSGLKKKMMVLSSDDEDENDDSDGDGGETKVSGRKRKKVKGTTIGGAEGSGKSSMNELKEILEDFMNQQMQMEMQWREAFEAREKERQMKEMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 32646707 | 32648785 | + | MELO3C009160.2.1 | Cme04g02727 | 326988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g02727 | 305 | PANTHER | - | 42 | 302 | - | - | |
| Cme04g02727 | 305 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 42 | 302 | - | - | |
| Cme04g02727 | 305 | Coils | Coil | 249 | 276 | - | - | |
| Cme04g02727 | 305 | MobiDBLite | consensus disorder prediction | 170 | 211 | - | - | |
| Cme04g02727 | 305 | ProSiteProfiles | Myb-like domain profile. | 59 | 115 | IPR001005 | - | |
| Cme04g02727 | 305 | CDD | GT1 | 57 | 122 | - | - | |
| Cme04g02727 | 305 | Coils | Coil | 213 | 233 | - | - | |
| Cme04g02727 | 305 | Gene3D | - | 59 | 120 | - | - | |
| Cme04g02727 | 305 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cme04g02727 | 305 | Pfam | Myb/SANT-like DNA-binding domain | 58 | 142 | IPR044822 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme04g02727 | Cme08g02207 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02727 | Cme-Chr4:32646707 | Cme03g00621 | Cme-Chr3:10194329 | 3.51E-07 | dispersed | |
| Cme02g02041 | Cme-Chr2:26459780 | Cme04g02727 | Cme-Chr4:32646707 | 8.12E-08 | transposed | |
| Cme03g02188 | Cme-Chr3:28871494 | Cme04g02727 | Cme-Chr4:32646707 | 3.91E-11 | transposed | |
| Cme04g02428 | Cme-Chr4:30926897 | Cme04g02727 | Cme-Chr4:32646707 | 6.93E-07 | transposed | |
| Cme07g01516 | Cme-Chr7:21010443 | Cme04g02727 | Cme-Chr4:32646707 | 2.73E-35 | transposed | |
| Cme10g00135 | Cme-Chr10:981355 | Cme04g02727 | Cme-Chr4:32646707 | 6.24E-09 | transposed | |
| Cme04g02727 | Cme-Chr4:32646707 | Cme08g02207 | Cme-Chr8:28103645 | 4.38E-49 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41297 | PF13837 | Myb_DNA-bind_4 | 2.40E-18 | CL0123 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g02727 | - | - | csv:101211490 | 483.796 |