Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02747 ATGGCCGCCGCATCCCCATCATGGCTCAACACCGGCGACAATTCCTGGCAAATTACAGCCTCCACTCTCGTAGGACTTCAGAGCATGCCTGGACTTGTGATTCTCTATGCCAGCATCGTCAAAAAGAAATGGGCTGTCAATTCTGCGTTTATGGCTCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCCTTCGGCGACCAGTTGATTCCTTTTTGGGGTAAAGGAATTCCAGCTCTGTCCCAAAATTACCTAATAGCGCAAGGCAATATCCCTGAGAGTGGCGCTAACGATGGAAATGGAACGCCCAGAATTCAACCCAATGTTCCCATGGCTTCACTTGTGTATTTTCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCTTGGATGGCCTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTTGGGGCATACAGTGTTTGGGGCGGTGGGTTTCTGTTTCAGTGGGGAGTAATTGATTACTCCGGTGGGTATGTAATTCATCTTTCGTCTGGAATTGCTGGGTTAACAGCAGCTTATTGGGTTGGGCCGAGGATAAAAAGTGACAGAGAGAGGTTTCCGCCGAATAACGTGTTGCTGATGTTGGCCGGAGCAGGGCTATTGTGGATGGGGTGGTCGGGTTTTAACGGGGGAGCACCGCACTCGGCGAACGTGGTGGCGTCGATAGCGGTGCTGAATACGAACGTGAGTGCGGCGACGAGCTTGTTGGTTTGGACCATTTTGGATGTGTTCTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACACCTGGCGCCGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAATTCTAGCCGGAAGTATTCCATGGCTATCCATGATGGTCCTTCATAAGAGATTGAGTTTCTTGCAAAAGGCTGATGACACGCTTGGCGTATTTCACACGCACGCGGTGGCAGGATTAATGGGCGGGCTTCTAACTGGGCTTTTAGCCGAGCCCACTCTTTGCGATCTTTACCTACCGATCACCGGCACGCGCGGCGCCTTTTACGGCAGAAACGGCGGCGTTCAGTTCCTCAAACAACTGGCCGGATCCACCTTCGTCATAGGCTGGAACATAGTCTCGACCACCGTAATACTCCTCTTTATTCGCCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTACGCTCTTTGGGGCGACGGCGAGAAATTTGATCCAAGAAGGCACGGGAATGCGGCGGCCAATATGGAAGAAGGAACTGGATCGCCTTATATAAATGGTGCTAGAGGAGTGATCATCGAATTGTAA 1431 50.8 MAAASPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPFWGKGIPALSQNYLIAQGNIPESGANDGNGTPRIQPNVPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILAGSIPWLSMMVLHKRLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPITGTRGAFYGRNGGVQFLKQLAGSTFVIGWNIVSTTVILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANMEEGTGSPYINGARGVIIEL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32753758 32756614 - MELO3C009140.2.1 Cme04g02747 327008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02747 476 Pfam Ammonium Transporter Family 16 436 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme04g02747 476 Gene3D Ammonium transporter AmtB like domains 1 439 IPR029020 -
Cme04g02747 476 PANTHER AMMONIUM TRANSPORTER MEP2 3 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme04g02747 476 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cme04g02747 476 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
Cme04g02747 476 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005887
Cme04g02747 476 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005887
Cme04g02747 476 PRINTS Rhesus blood group protein signature 306 324 IPR002229 GO:0005887
Cme04g02747 476 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005887
Cme04g02747 476 PANTHER AMMONIUM TRANSPORTER 2 3 473 - -
Cme04g02747 476 TIGRFAM amt: ammonium transporter 13 436 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme04g02747 476 SUPERFAMILY Ammonium transporter 8 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01649 Cme-Chr3:25286941 Cme04g02747 Cme-Chr4:32753758 5.51E-178 dispersed
Cme04g02747 Cme-Chr4:32753758 Cme08g00972 Cme-Chr8:6390240 4.57E-140 dispersed
Cme04g02747 Cme-Chr4:32753758 Cme05g00647 Cme-Chr5:6930540 3.03E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02747 K03320 - csv:101207321 927.546