Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02749 ATGGCTATGGGATTTTCTTTACCTTGCCTTGTGATATTTTTTTTCTGTGTCTCTGTTCTTCGTGTTCAAGCTCCATTTGTCTACCATGGATTCAATAATTCAGGTCTGGACCTTGATCAAGGAGCTTTTATAGAGCCTTCTGGCTTGTTAAGACTAACCGACAGCTCCCAGTACGTTATCGGCCGTGCCTTCCATCCTATTGCCCAGCCGATGTTCGACATAAATTCTGAAACAGTTTCAGATGTTTCTTCTTTCAGCACATCTTTTGTGTTTGCGATTGTTCCTTCAAGCTCTGGTCCACCAGTTGGATATGGCCTCGCCTTTGTTATGGCTCCATCAACCCAATTTCCAGGTGCAGCTAGTGAACATTACTTGGGATTATTCAACTCCTCCAACAATGGTGACCCTTCGAATCATATCTTTGCAGTCGAATTTGATACTGTTAATGGCCACGATGACGAAAAAAATTTTAAAGGCAACCATGTTGGAATCAACAAGAATGGGGTGCGATCAAGTGCGTCTGAATCGGCTGAGTATTCTGACTATGGCTCTGATGTGAAGACGGAGGTGTATTTGGATACTGGTGATCTAATCCAAGCTTGGATCGATTATGATGGGCGTAGTAAGTTAGTGAATGTCACAATAGCTCCCGCAAATGTAATCAGACCAACTGAGCCATTGATCTCATATTCCATTAACTTGACTCCAGTTTTGAATGAGATGATGTATGTGGGCTTCTCTGCATCAACTGGAAAAGAAACAAGCTTCCACTACATTTCAGGTTGGAGTTTTGCAATCAACGAATCAGCACCTCAGTTAAATGTTCATCAACTTCCTCCACCACTGAAAGTGCAAAGTCCTCTGCCTTCATCGTCAACATTCAATCCTCTAGTCACTGTCGTTGTTCCAATATTATCTGCCATCACACTCATGGGAATTTTGTTCTTAGCCTCCATTTTCAGAAGAAGGTTCCGAGGTGAGAACCTTGAAGAATGGGAAAGAGATTGTCCTCACAGATTTGGTTATAGAGATCTGTACAAAGCAACAAAGGGATTTAAAGACTCCGAGCTCATCGGATCAGGAGGCTTTGGCTCAGTATACAGAGGTGTCTTACCTTCCACGGGATGTGAAGTTGCTGTAAAGAGGATAACAAGAAATGCGAATCAAGGAATGAGGGAATTCGCTGCAGAAATTGAAAGTTTGGGCCGACTAAGACACAAGAACTTGGTAAATCTCCAAGGATGGTGCAAGAAACAGAACGATCTTCTCTTGGTTTATGACTATATTCCAAACGGAAGCTTGGATTCTCTCCTTTACCATCCAAAAGACAACTTTGTACTGAATTGGGAACAAAGAATCAACATCCTCAAAGGAGTTGCTGGTGGATTGTTATACTTACACGAAGAATGGGAACAAGTCGTGATCCATCGAGATGTTAAGCCAAGTAATATATTGATAGATATTAGCATGAATGCTCGACTAAGCGACTTCGGTCTTGCAAGGTTATACGACCATGACCAAATATCACATACAACCAGCGTCGTTGGCACAATCGGGTACATCTCACCCGAGTTGGCTCGCACCGGAAAAGCATCGAAAACTACAGATGTCTTTGCATATGGGGTACTGATTCTTGAAGTGGCTTGTGGAAGAAGACCTCTAGAATCAGATATATTCATATTGGTAGATTGGGTAATGGAATGCCATGAAAAAGGTCGTATTCTTGATGCAGCTGATCCAAAGTTGAATGAAATTTATGACACGGTTGAGATGGAAATGGTTTTGAAACTTGGACTTCTTTGTTCCCATTACAACCCTGAAGCTAGGCCAAGCATGAGGCAAGTCACAAGGTTTCTTAATGGAGAAGACCAAATTCTTGCTTTTGATCCTTCACCCTATTCTCAAATTACATTTCAATCTAGCTCCGGATTCACTCAATTTATTCCACCTTCTTCCCGTACTTCAACCACTAGTTTTCTCTCTTCAACTTCCATTGATGTAGGCAGGTAA 2010 41.94 MAMGFSLPCLVIFFFCVSVLRVQAPFVYHGFNNSGLDLDQGAFIEPSGLLRLTDSSQYVIGRAFHPIAQPMFDINSETVSDVSSFSTSFVFAIVPSSSGPPVGYGLAFVMAPSTQFPGAASEHYLGLFNSSNNGDPSNHIFAVEFDTVNGHDDEKNFKGNHVGINKNGVRSSASESAEYSDYGSDVKTEVYLDTGDLIQAWIDYDGRSKLVNVTIAPANVIRPTEPLISYSINLTPVLNEMMYVGFSASTGKETSFHYISGWSFAINESAPQLNVHQLPPPLKVQSPLPSSSTFNPLVTVVVPILSAITLMGILFLASIFRRRFRGENLEEWERDCPHRFGYRDLYKATKGFKDSELIGSGGFGSVYRGVLPSTGCEVAVKRITRNANQGMREFAAEIESLGRLRHKNLVNLQGWCKKQNDLLLVYDYIPNGSLDSLLYHPKDNFVLNWEQRINILKGVAGGLLYLHEEWEQVVIHRDVKPSNILIDISMNARLSDFGLARLYDHDQISHTTSVVGTIGYISPELARTGKASKTTDVFAYGVLILEVACGRRPLESDIFILVDWVMECHEKGRILDAADPKLNEIYDTVEMEMVLKLGLLCSHYNPEARPSMRQVTRFLNGEDQILAFDPSPYSQITFQSSSGFTQFIPPSSRTSTTSFLSSTSIDVGR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32763827 32770999 - MELO3C009138.2.1 Cme04g02749 327010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02749 669 SUPERFAMILY Protein kinase-like (PK-like) 336 657 IPR011009 -
Cme04g02749 669 SMART serkin_6 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02749 669 Gene3D Transferase(Phosphotransferase) domain 1 429 627 - -
Cme04g02749 669 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02749 669 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 10 657 - -
Cme04g02749 669 CDD lectin_legume_LecRK_Arcelin_ConA 26 267 IPR001220 GO:0030246
Cme04g02749 669 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Cme04g02749 669 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Cme04g02749 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 281 IPR013320 -
Cme04g02749 669 Pfam Legume lectin domain 25 278 IPR001220 GO:0030246
Cme04g02749 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cme04g02749 669 Gene3D - 23 277 - -
Cme04g02749 669 Pfam Protein kinase domain 352 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02749 669 PANTHER - 10 657 - -
Cme04g02749 669 CDD STKc_IRAK 358 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02749 Cme-Chr4:32763827 Cme09g00090 Cme-Chr9:677916 0 dispersed
Cme05g00712 Cme-Chr5:8316206 Cme04g02749 Cme-Chr4:32763827 4.91E-63 dispersed
Cme04g02748 Cme-Chr4:32758497 Cme04g02749 Cme-Chr4:32763827 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64861 PF00069 Pkinase 7.40E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02749 - - csv:101216151 1214.91