Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02753 ATGGGAAAAAGCCACTACCCTCCGAGTGAATTTCAGGTATACCCATTTCGGTTCATGCAGATTCTTCCACCAAAAACTGCTGATTGGTGCTCTAAATCACCAAATAACAACAGAAAACTCAAGAACCAACAATGGAGAAGCTATTCTTCGTACCTCATTGCTCTGTTTTTTGCTCTTCTTTTGGCTTGTTCCTTTCGACCAGTCGCTGGCCAGATGTGGGATGGAGTGTCTGTTACTCAAGGCGATTTTCAAGCTCTTCAAGCAATAAAACATGAACTCGTTGATCTAAAAGGAGTTTTGCGTAGCTGGAATGGTAGTAATGGAGCTTGTTACGGGCAGTGGGCTGGAATCAAGTGCGTGAAAGGGCAGGTTATTGCTATACAGCTTCCATGGAAGGCTCTTGCCGGCAGGATTTCTGACAGGATTGGGCAGCTCCGGGAACTTCGGAAGCTTAGCCTCCACGACAATGCGATCTCTGGCGTGATCCCTCGGTCCATCGGGTTCCTTCCAAATCTCAGAGGAATTTATCTTTTCAACAACAGATTGTCAGGTTCTATTCCTCCTACTATTGGTCATCTTCCCCTACTTCAAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTTCGGTATAGCAAATTCTACCAAATTGATTAGAGTTAATCTGAGTTACAATTCGTTGTCGGGATCTATCCCAAGAAGTTTTACACAGTCGTTCTCTCTTATAATTCTTGCCCTTCAGCACAATAATATTTCTGGGACTGTCCCAGATTCTTGGGGAAGTCTTGGAAACAGAACTTGCCCACTTGGGGTTTTGACACTTGATCATAATGCTATATCTGGAGCAATTCCAGCTTCTTTAACTAAATTGGAATGGCTTCAAGAGATTTCCATCAGTGAGAACAAGATCTCTGGAGCTATACCAGGTGAAATAGGCAGGCTGAAGAGACTTCGTCTTTTGGATTTGTCGAACAACGCCATTAATGGCAGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTCAGTTATTGAAGGTTGAAAATAATCGTCTTGAAAGCCAGATTCCAGGAGATATTGATAGAATGCACAATCTCTCGGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTATTAGCCAACTTGATTTCTCAGAAAATAACTTCACTGGACAGATTCCAACATCATTGACCCGGTTGTTGAATCTAACCTCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTCCCGGTTCTCCTATCAAATAAGTTCAATGCGAGCTCTTTTGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCCGCATCCTCCCCACAAAATGTTACTACTCCATCAACTGAGGTCCTGAAACCGCCTCACCACCGCAGACTTAGTGTAAAGGACATAGTCCTGATAGCTGCAGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTATTATCAAAAAGAGCTGCTGCCAGAAAGACTGACAAAACAACTGCCAAGCAAGCTGCTGCCAGAAGCATCGAAAAGGCAGCACCCGGGAGCACAGAAGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCGACTGCTGAGATCATGGGCAAGAGCACATATGGAACAGCATATAAAGCAACATTGGAAGACGGAAATGAAGTTGCAGTGAAAAGATTGAGAGAGAAAACAACAAAAGGGCAAAAGGAATTTGAAACCGAAGTTGCAGGCCTCGGAAAAATTCGACATCCAAATCTACTTGCTCTTAGAGCTTACTACTTGGGCCCCAAAGGAGAGAAGCTCCTGGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGTGGGCCAGAAACCACGGTCGATTGGGCAACAAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTTATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGATGATCAGAATAATGCTCGTATTGCAGATTTTGGGCTTCCCAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGAACACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAGACCACAACAAAGACAGATGTCTACAGCCTTGGAGTCATAATATTGGAACTTTTGACAGGAAAATCTCCTGGAGAAGCCATGGATGGAATGGACTTACCACAGTGGGTGGCCTCAATAGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACACAAAATATTGGTGATGAACTGCTCAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCGTCACCAACTGCTCGGCCAGATGTTCAGCAGATTCTCCAGCAACTGGAGGAAATCAATGCTTCTACTTCTGGTGATGATGGTGCCAAAAATCAACCAGAAAATGAATAG 2574 44.09 MGKSHYPPSEFQVYPFRFMQILPPKTADWCSKSPNNNRKLKNQQWRSYSSYLIALFFALLLACSFRPVAGQMWDGVSVTQGDFQALQAIKHELVDLKGVLRSWNGSNGACYGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNAISGVIPRSIGFLPNLRGIYLFNNRLSGSIPPTIGHLPLLQTLDLSNNLLTGEIPFGIANSTKLIRVNLSYNSLSGSIPRSFTQSFSLIILALQHNNISGTVPDSWGSLGNRTCPLGVLTLDHNAISGAIPASLTKLEWLQEISISENKISGAIPGEIGRLKRLRLLDLSNNAINGSFPSSFSNLSSLQLLKVENNRLESQIPGDIDRMHNLSVVKLGKNRFSGEIPASFGNISAISQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPQNVTTPSTEVLKPPHHRRLSVKDIVLIAAGALLVLLLLLCSILLCCLLSKRAAARKTDKTTAKQAAARSIEKAAPGSTEVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWATRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQNNARIADFGLPKLMTSAAATNVIATAGTQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPTARPDVQQILQQLEEINASTSGDDGAKNQPENE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32790058 32793118 - MELO3C009133.2.1 Cme04g02753 327014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02753 857 SUPERFAMILY L domain-like 100 450 - -
Cme04g02753 857 Gene3D Transferase(Phosphotransferase) domain 1 647 855 - -
Cme04g02753 857 SMART LRR_typ_2 317 340 IPR003591 -
Cme04g02753 857 SMART LRR_typ_2 169 192 IPR003591 -
Cme04g02753 857 SMART LRR_typ_2 145 168 IPR003591 -
Cme04g02753 857 SMART LRR_typ_2 413 436 IPR003591 -
Cme04g02753 857 SMART LRR_typ_2 193 217 IPR003591 -
Cme04g02753 857 SMART LRR_typ_2 341 365 IPR003591 -
Cme04g02753 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
Cme04g02753 857 CDD STKc_IRAK 575 840 - -
Cme04g02753 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02753 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Cme04g02753 857 MobiDBLite consensus disorder prediction 838 857 - -
Cme04g02753 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 845 - -
Cme04g02753 857 Gene3D Ribonuclease Inhibitor 269 465 IPR032675 -
Cme04g02753 857 PRINTS Leucine-rich repeat signature 196 209 - -
Cme04g02753 857 PRINTS Leucine-rich repeat signature 317 330 - -
Cme04g02753 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 35 845 - -
Cme04g02753 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cme04g02753 857 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515
Cme04g02753 857 Pfam Leucine rich repeat 146 206 IPR001611 GO:0005515
Cme04g02753 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672|GO:0006468
Cme04g02753 857 Gene3D Ribonuclease Inhibitor 79 268 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02753 Cme08g02167 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02753 Cme-Chr4:32790058 Cme10g01191 Cme-Chr10:12091673 0 dispersed
Cme04g02753 Cme-Chr4:32790058 Cme02g01293 Cme-Chr2:18860631 4.68E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64862 PF07714 PK_Tyr_Ser-Thr 1.80E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02753 - - csv:101206358 1572.37