Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02759 ATGAATAGCATAAACCAAACAATAAATACACTCGCTGGGGGATCTTCTGACAACAGAACCAATAATTTCGCCATGGAAGTTCCTAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCCTCTTTCTCTTCTGGTTTAAGCCCCACTGAGATTCTAAATTCCCCTCTTCTCTTTTCCTTTGGTGTTTTTCCATCTCCTACTACCGGTGCTTTAAATTTGAGAAATGATTGTGAGGAGGTTGACCAACAAGAAATGAAGGGAGATGTTAAAAATTACTCTGTTTCTGCGTATAACCCACAAACCGGATCCTCTCTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCTACTGAATCCAAGCGGTTTGTCGTGTGATGAAAGTGGGGCTAAATCAGAATTTGTTAACACAGAAATGGCGGCAGCTGAATCAAAGCAAAATTCTCAGTTAGCAATTTACAACAGAGAACAACAAAAATCAGAGAACGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACGTTTCCAAGTTGCCCAACAAAGAAAAAAGTTGAAAGATCATTAGATGGCCAAATTACCGAGATTGTTTATAAGGGAACCCATAATCACGCCAAGCCTCAGCCGACAAGACGTTCCGGTAACTCCGGCGTTTACGATCCATCGGCGGCGGAAAGCGGGGTATTGCAGGAGGATTGTTCGGTCTCGGTGGGGGAGGAGGAAATCGAACCCAATTCGCCGTTTAGCAACTCGATTGAGGAGAATGAAAAGGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAATGAGGGATATTGTGGGGGAGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACAAGTGAAATTGACATACTGCCTGATGGTTACAGATGGAGGAAATACGGACAAAAAGTCGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCAGCCAACGACATGAGGGCTGTGATCACTACCTACGAAGGCAAACACAACCACGAAGTTCCAGCAGCACGTGGCAGCGGTGGCGGTGGCTATAACACCATCAACCGACCTATACCAACCAACATTCCAATGGCATTGAGGCCATTATCCGTTGTCACCAGTGATTCTTTCCCGGCAAATTTTCCAGCTGCATTCCGGCCAGGAAATTTAGGAATGTCAGAAATAGGAACACAAGCATCATCATTCCCATTTCAAACCTCACAAGGAGGGCCTCCAAGTTTCCAAGTGTCAGGATTTGGATCGGCAGCCAAGGAAGAAGTAAGAGACGACACGTACTTCATCAACTCATTTCTATCTTAG 1431 44.23 MNSINQTINTLAGGSSDNRTNNFAMEVPKFKSLQPPPFPMSPSSYLSSFSSGLSPTEILNSPLLFSFGVFPSPTTGALNLRNDCEEVDQQEMKGDVKNYSVSAYNPQTGSSLSSYFQSSSSNVTLLNPSGLSCDESGAKSEFVNTEMAAAESKQNSQLAIYNREQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGTHNHAKPQPTRRSGNSGVYDPSAAESGVLQEDCSVSVGEEEIEPNSPFSNSIEENEKEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGGGYNTINRPIPTNIPMALRPLSVVTSDSFPANFPAAFRPGNLGMSEIGTQASSFPFQTSQGGPPSFQVSGFGSAAKEEVRDDTYFINSFLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32820268 32823207 + MELO3C009127.2.1 Cme04g02759 327020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02759 476 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 19 462 - -
Cme04g02759 476 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 274 290 - -
Cme04g02759 476 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 219 299 - -
Cme04g02759 476 Gene3D WRKY domain 305 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Gene3D WRKY domain 154 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 1 22 - -
Cme04g02759 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 462 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02759 K13424 WRKY33; WRKY transcription factor 33 - csv:101205651 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01060 Cme-Chr2:15561903 Cme04g02759 Cme-Chr4:32820268 3.03E-47 dispersed
Cme04g02759 Cme-Chr4:32820268 Cme09g00236 Cme-Chr9:1797171 5.73E-81 dispersed
Cme12g01756 Cme-Chr12:24233364 Cme04g02759 Cme-Chr4:32820268 7.10E-25 dispersed
Cme04g02759 Cme-Chr4:32820268 Cme10g00381 Cme-Chr10:2444550 1.04E-83 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00537 . 104 390 WRKY Transcription Factor Family AT2G04880 50.5 4.2e-71 265.8
Cme09g00236 . 13 505 WRKY Transcription Factor Family AT2G03340 51.9 5.1e-118 421.8
Cme10g00381 . 21 420 WRKY Transcription Factor Family AT2G03340 58.6 5.3e-107 385.2
Cme10g00381 . 37 420 WRKY Transcription Factor Family AT1G13960 58.3 1.2e-100 363.6
Cme09g00236 . 140 459 WRKY Transcription Factor Family AT1G13960 53.1 5.4e-82 301.6
Cme06g02787 . 202 464 WRKY Transcription Factor Family AT1G13960 50.9 7.1e-66 248.1
Cme04g02759 . 160 383 WRKY Transcription Factor Family AT1G13960 53.1 3.0e-64 242.7
Cme06g02787 . 23 531 WRKY Transcription Factor Family AT4G26640 52.7 4.7e-127 451.8
Cme10g00381 . 126 376 WRKY Transcription Factor Family AT4G26640 51.4 1.0e-65 248.1
Cme04g02759 . 157 381 WRKY Transcription Factor Family AT5G07100 56.8 1.6e-65 246.1
Cme11g01709 . 140 312 WRKY Transcription Factor Family AT5G07100 57.4 2.4e-56 215.7
Cme02g01060 . 189 512 WRKY Transcription Factor Family AT4G30935 61.5 1.2e-100 364.0
Cme06g02711 . 350 634 WRKY Transcription Factor Family AT2G38470 51.9 1.7e-68 257.3
Cme10g00381 . 127 375 WRKY Transcription Factor Family AT2G38470 55.6 2.2e-68 256.9
Cme06g02787 . 210 452 WRKY Transcription Factor Family AT2G38470 55.1 7.3e-64 241.9
Cme09g00236 . 233 461 WRKY Transcription Factor Family AT2G38470 53.4 2.0e-61 233.8
Cme06g01785 . 75 166 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Cme04g01727 . 12 311 WRKY Transcription Factor Family AT1G80840 50.2 3.0e-65 245.7
Cme08g00421 . 113 603 WRKY Transcription Factor Family AT1G62300 53.6 4.4e-107 385.6
Cme12g01756 CCT,ECH 250 414 WRKY Transcription Factor Family AT1G62300 51.5 3.7e-37 153.3
Cme06g01299 . 246 330 WRKY Transcription Factor Family AT1G62300 82.4 1.1e-36 151.8
Cme02g01901 CCT,ECH 262 347 WRKY Transcription Factor Family AT1G68150 84.9 4.5e-39 159.1
Cme01g00436 . 181 278 WRKY Transcription Factor Family AT1G68150 75.5 6.5e-38 155.2
Cme08g00421 . 350 447 WRKY Transcription Factor Family AT1G68150 73.5 1.2e-36 151.0
Cme08g00421 . 51 592 WRKY Transcription Factor Family AT4G22070 50.9 6.8e-105 378.3
Cme06g01299 . 238 329 WRKY Transcription Factor Family AT4G22070 79.3 1.2e-37 154.8
Cme12g01756 CCT,ECH 246 423 WRKY Transcription Factor Family AT4G22070 53.4 3.6e-37 153.3
Cme08g00421 . 131 593 WRKY Transcription Factor Family AT4G04450 52.3 5.0e-98 355.1
Cme01g00436 . 1 405 WRKY Transcription Factor Family AT4G04450 52.1 2.0e-91 333.2
Cme01g00436 . 180 268 WRKY Transcription Factor Family AT1G18860 75.3 7.8e-37 152.1
Cme06g01299 . 246 387 WRKY Transcription Factor Family AT5G15130 71.1 6.5e-41 165.6
Cme06g00007 . 111 220 WRKY Transcription Factor Family AT2G44745 81.4 7.9e-52 200.7
Cme11g00203 . 201 287 WRKY Transcription Factor Family AT2G44745 81.6 3.2e-37 152.1
Cme11g00203 . 194 301 WRKY Transcription Factor Family AT4G39410 78.8 1.5e-45 180.3
Cme07g01613 . 112 202 WRKY Transcription Factor Family AT5G41570 82.4 3.6e-42 168.3
Cme08g00164 . 89 262 WRKY Transcription Factor Family AT4G18170 55.6 6.1e-45 178.3
Cme01g01544 . 103 225 WRKY Transcription Factor Family AT4G18170 65.9 5.0e-39 158.7
Cme06g00800 CCT,ECH 1 167 WRKY Transcription Factor Family AT5G49520 52.4 9.7e-40 161.4
Cme01g01544 . 124 271 WRKY Transcription Factor Family AT5G49520 57.6 3.7e-39 159.5
Cme08g00164 . 90 182 WRKY Transcription Factor Family AT5G49520 75.3 3.5e-37 152.9
Cme07g01613 . 103 204 WRKY Transcription Factor Family AT1G64000 74.5 1.0e-42 170.2
Cme03g01437 . 125 225 WRKY Transcription Factor Family AT1G69310 85.1 1.8e-48 189.9
Cme11g02090 CCT,ECH 143 249 WRKY Transcription Factor Family AT1G69310 69.2 1.1e-37 154.1
Cme08g00164 . 73 253 WRKY Transcription Factor Family AT1G29860 55.8 5.6e-50 194.9
Cme01g01544 . 107 222 WRKY Transcription Factor Family AT1G29860 70.7 2.0e-39 159.8
Cme06g01785 . 72 168 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Cme03g00112 . 50 147 WRKY Transcription Factor Family AT5G13080 76.5 2.7e-40 161.8
Cme04g00334 . 1 291 WRKY Transcription Factor Family AT4G31550 61.4 2.4e-87 318.9
Cme04g00334 . 1 349 WRKY Transcription Factor Family AT2G24570 60.1 1.5e-107 386.3
Cme01g02020 CCT 196 341 WRKY Transcription Factor Family AT2G24570 55.3 1.7e-42 170.2
Cme05g00464 CCT 188 339 WRKY Transcription Factor Family AT2G24570 54.6 9.2e-41 164.5
Cme08g00590 . 126 280 WRKY Transcription Factor Family AT2G30590 61.1 2.1e-44 176.8
Cme11g00698 . 160 285 WRKY Transcription Factor Family AT2G30590 68.2 8.1e-44 174.9
Cme04g00334 . 167 328 WRKY Transcription Factor Family AT2G30590 56.7 1.7e-41 167.2
Cme02g01624 . 127 270 WRKY Transcription Factor Family AT2G30590 55.8 6.4e-41 165.2
Cme01g02020 CCT 2 351 WRKY Transcription Factor Family AT5G28650 51.4 5.3e-76 281.6
Cme08g00590 . 130 289 WRKY Transcription Factor Family AT5G28650 60.0 2.7e-43 172.9
Cme11g00698 . 181 287 WRKY Transcription Factor Family AT5G28650 72.9 7.3e-41 164.9
Cme08g00057 . 230 344 WRKY Transcription Factor Family AT1G30650 86.1 6.7e-55 211.8
Cme06g00151 . 188 284 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Cme09g01938 . 157 331 WRKY Transcription Factor Family AT5G52830 51.3 2.5e-47 186.4
Cme06g00151 . 192 290 WRKY Transcription Factor Family AT5G52830 75.5 1.3e-40 164.1
Cme08g00057 . 233 343 WRKY Transcription Factor Family AT2G34830 90.1 1.8e-55 213.8
Cme06g00151 . 189 284 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Cme01g00313 . 16 282 WRKY Transcription Factor Family AT1G29280 50.2 1.1e-44 177.2
Cme01g00313 . 20 297 WRKY Transcription Factor Family AT3G58710 57.0 4.4e-52 201.8
Cme06g01105 . 99 251 WRKY Transcription Factor Family AT5G24110 51.0 1.8e-38 156.8
Cme01g00537 . 104 390 WRKY Transcription Factor Family AT2G04880 50.5 4.2e-71 265.8
Cme04g00334 . 1 291 WRKY Transcription Factor Family AT4G31550 61.4 2.4e-87 318.9
Cme06g00007 . 111 220 WRKY Transcription Factor Family AT2G44745 81.4 7.9e-52 200.7
Cme11g00203 . 201 287 WRKY Transcription Factor Family AT2G44745 81.6 3.2e-37 152.1
Cme11g00203 . 194 301 WRKY Transcription Factor Family AT4G39410 78.8 1.5e-45 180.3
Cme08g00057 . 230 344 WRKY Transcription Factor Family AT1G30650 86.1 6.7e-55 211.8
Cme06g00151 . 188 284 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Cme04g00334 . 1 349 WRKY Transcription Factor Family AT2G24570 60.1 1.5e-107 386.3
Cme01g02020 CCT 196 341 WRKY Transcription Factor Family AT2G24570 55.3 1.7e-42 170.2
Cme05g00464 CCT 188 339 WRKY Transcription Factor Family AT2G24570 54.6 9.2e-41 164.5
Cme06g02787 . 23 531 WRKY Transcription Factor Family AT4G26640 52.7 4.7e-127 451.8
Cme10g00381 . 126 376 WRKY Transcription Factor Family AT4G26640 51.4 1.0e-65 248.1
Cme08g00590 . 126 280 WRKY Transcription Factor Family AT2G30590 61.1 2.1e-44 176.8
Cme11g00698 . 160 285 WRKY Transcription Factor Family AT2G30590 68.2 8.1e-44 174.9
Cme04g00334 . 167 328 WRKY Transcription Factor Family AT2G30590 56.7 1.7e-41 167.2
Cme02g01624 . 127 270 WRKY Transcription Factor Family AT2G30590 55.8 6.4e-41 165.2
Cme07g01613 . 112 202 WRKY Transcription Factor Family AT5G41570 82.4 3.6e-42 168.3
Cme04g02759 . 157 381 WRKY Transcription Factor Family AT5G07100 56.8 1.6e-65 246.1
Cme11g01709 . 140 312 WRKY Transcription Factor Family AT5G07100 57.4 2.4e-56 215.7
Cme09g01938 . 157 331 WRKY Transcription Factor Family AT5G52830 51.3 2.5e-47 186.4
Cme06g00151 . 192 290 WRKY Transcription Factor Family AT5G52830 75.5 1.3e-40 164.1
Cme08g00164 . 89 262 WRKY Transcription Factor Family AT4G18170 55.6 6.1e-45 178.3
Cme01g01544 . 103 225 WRKY Transcription Factor Family AT4G18170 65.9 5.0e-39 158.7
Cme09g00236 . 13 505 WRKY Transcription Factor Family AT2G03340 51.9 5.1e-118 421.8
Cme10g00381 . 21 420 WRKY Transcription Factor Family AT2G03340 58.6 5.3e-107 385.2
Cme06g01105 . 99 251 WRKY Transcription Factor Family AT5G24110 51.0 1.8e-38 156.8
Cme08g00421 . 51 592 WRKY Transcription Factor Family AT4G22070 50.9 6.8e-105 378.3
Cme06g01299 . 238 329 WRKY Transcription Factor Family AT4G22070 79.3 1.2e-37 154.8
Cme12g01756 CCT,ECH 246 423 WRKY Transcription Factor Family AT4G22070 53.4 3.6e-37 153.3
Cme02g01060 . 189 512 WRKY Transcription Factor Family AT4G30935 61.5 1.2e-100 364.0
Cme06g02711 . 350 634 WRKY Transcription Factor Family AT2G38470 51.9 1.7e-68 257.3
Cme10g00381 . 127 375 WRKY Transcription Factor Family AT2G38470 55.6 2.2e-68 256.9
Cme06g02787 . 210 452 WRKY Transcription Factor Family AT2G38470 55.1 7.3e-64 241.9
Cme09g00236 . 233 461 WRKY Transcription Factor Family AT2G38470 53.4 2.0e-61 233.8
Cme08g00057 . 233 343 WRKY Transcription Factor Family AT2G34830 90.1 1.8e-55 213.8
Cme06g00151 . 189 284 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Cme10g00381 . 37 420 WRKY Transcription Factor Family AT1G13960 58.3 1.2e-100 363.6
Cme09g00236 . 140 459 WRKY Transcription Factor Family AT1G13960 53.1 5.4e-82 301.6
Cme06g02787 . 202 464 WRKY Transcription Factor Family AT1G13960 50.9 7.1e-66 248.1
Cme04g02759 . 160 383 WRKY Transcription Factor Family AT1G13960 53.1 3.0e-64 242.7
Cme04g01727 . 12 311 WRKY Transcription Factor Family AT1G80840 50.2 3.0e-65 245.7
Cme08g00421 . 131 593 WRKY Transcription Factor Family AT4G04450 52.3 5.0e-98 355.1
Cme01g00436 . 1 405 WRKY Transcription Factor Family AT4G04450 52.1 2.0e-91 333.2
Cme06g01785 . 75 166 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Cme06g00800 CCT,ECH 1 167 WRKY Transcription Factor Family AT5G49520 52.4 9.7e-40 161.4
Cme01g01544 . 124 271 WRKY Transcription Factor Family AT5G49520 57.6 3.7e-39 159.5
Cme08g00164 . 90 182 WRKY Transcription Factor Family AT5G49520 75.3 3.5e-37 152.9
Cme07g01613 . 103 204 WRKY Transcription Factor Family AT1G64000 74.5 1.0e-42 170.2
Cme03g01437 . 125 225 WRKY Transcription Factor Family AT1G69310 85.1 1.8e-48 189.9
Cme11g02090 CCT,ECH 143 249 WRKY Transcription Factor Family AT1G69310 69.2 1.1e-37 154.1
Cme08g00421 . 113 603 WRKY Transcription Factor Family AT1G62300 53.6 4.4e-107 385.6
Cme12g01756 CCT,ECH 250 414 WRKY Transcription Factor Family AT1G62300 51.5 3.7e-37 153.3
Cme06g01299 . 246 330 WRKY Transcription Factor Family AT1G62300 82.4 1.1e-36 151.8
Cme01g00436 . 180 268 WRKY Transcription Factor Family AT1G18860 75.3 7.8e-37 152.1
Cme01g00313 . 16 282 WRKY Transcription Factor Family AT1G29280 50.2 1.1e-44 177.2
Cme01g00313 . 20 297 WRKY Transcription Factor Family AT3G58710 57.0 4.4e-52 201.8
Cme08g00164 . 73 253 WRKY Transcription Factor Family AT1G29860 55.8 5.6e-50 194.9
Cme01g01544 . 107 222 WRKY Transcription Factor Family AT1G29860 70.7 2.0e-39 159.8
Cme06g01299 . 246 387 WRKY Transcription Factor Family AT5G15130 71.1 6.5e-41 165.6
Cme01g02020 CCT 2 351 WRKY Transcription Factor Family AT5G28650 51.4 5.3e-76 281.6
Cme08g00590 . 130 289 WRKY Transcription Factor Family AT5G28650 60.0 2.7e-43 172.9
Cme11g00698 . 181 287 WRKY Transcription Factor Family AT5G28650 72.9 7.3e-41 164.9
Cme06g01785 . 72 168 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Cme03g00112 . 50 147 WRKY Transcription Factor Family AT5G13080 76.5 2.7e-40 161.8
Cme02g01901 CCT,ECH 262 347 WRKY Transcription Factor Family AT1G68150 84.9 4.5e-39 159.1
Cme01g00436 . 181 278 WRKY Transcription Factor Family AT1G68150 75.5 6.5e-38 155.2
Cme08g00421 . 350 447 WRKY Transcription Factor Family AT1G68150 73.5 1.2e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013379 0 1 2 0 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41298 PF03106 WRKY 9.60E-25 CL0274 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g02759 Cme_Chr04 FPKM 12.353234 9.575895 27.345556 23.488142 32.440617 17.578314 29.610916 17.672358 16.076111 15.849372