Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02759 ATGAATAGCATAAACCAAACAATAAATACACTCGCTGGGGGATCTTCTGACAACAGAACCAATAATTTCGCCATGGAAGTTCCTAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCCTCTTTCTCTTCTGGTTTAAGCCCCACTGAGATTCTAAATTCCCCTCTTCTCTTTTCCTTTGGTGTTTTTCCATCTCCTACTACCGGTGCTTTAAATTTGAGAAATGATTGTGAGGAGGTTGACCAACAAGAAATGAAGGGAGATGTTAAAAATTACTCTGTTTCTGCGTATAACCCACAAACCGGATCCTCTCTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCTACTGAATCCAAGCGGTTTGTCGTGTGATGAAAGTGGGGCTAAATCAGAATTTGTTAACACAGAAATGGCGGCAGCTGAATCAAAGCAAAATTCTCAGTTAGCAATTTACAACAGAGAACAACAAAAATCAGAGAACGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACGTTTCCAAGTTGCCCAACAAAGAAAAAAGTTGAAAGATCATTAGATGGCCAAATTACCGAGATTGTTTATAAGGGAACCCATAATCACGCCAAGCCTCAGCCGACAAGACGTTCCGGTAACTCCGGCGTTTACGATCCATCGGCGGCGGAAAGCGGGGTATTGCAGGAGGATTGTTCGGTCTCGGTGGGGGAGGAGGAAATCGAACCCAATTCGCCGTTTAGCAACTCGATTGAGGAGAATGAAAAGGAACCGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAATGAGGGATATTGTGGGGGAGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACAAGTGAAATTGACATACTGCCTGATGGTTACAGATGGAGGAAATACGGACAAAAAGTCGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCAGCCAACGACATGAGGGCTGTGATCACTACCTACGAAGGCAAACACAACCACGAAGTTCCAGCAGCACGTGGCAGCGGTGGCGGTGGCTATAACACCATCAACCGACCTATACCAACCAACATTCCAATGGCATTGAGGCCATTATCCGTTGTCACCAGTGATTCTTTCCCGGCAAATTTTCCAGCTGCATTCCGGCCAGGAAATTTAGGAATGTCAGAAATAGGAACACAAGCATCATCATTCCCATTTCAAACCTCACAAGGAGGGCCTCCAAGTTTCCAAGTGTCAGGATTTGGATCGGCAGCCAAGGAAGAAGTAAGAGACGACACGTACTTCATCAACTCATTTCTATCTTAG 1431 44.23 MNSINQTINTLAGGSSDNRTNNFAMEVPKFKSLQPPPFPMSPSSYLSSFSSGLSPTEILNSPLLFSFGVFPSPTTGALNLRNDCEEVDQQEMKGDVKNYSVSAYNPQTGSSLSSYFQSSSSNVTLLNPSGLSCDESGAKSEFVNTEMAAAESKQNSQLAIYNREQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGTHNHAKPQPTRRSGNSGVYDPSAAESGVLQEDCSVSVGEEEIEPNSPFSNSIEENEKEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGGGYNTINRPIPTNIPMALRPLSVVTSDSFPANFPAAFRPGNLGMSEIGTQASSFPFQTSQGGPPSFQVSGFGSAAKEEVRDDTYFINSFLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32820268 32823207 + MELO3C009127.2.1 Cme04g02759 327020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02759 476 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 19 462 - -
Cme04g02759 476 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 274 290 - -
Cme04g02759 476 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 219 299 - -
Cme04g02759 476 Gene3D WRKY domain 305 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 Gene3D WRKY domain 154 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g02759 476 MobiDBLite consensus disorder prediction 1 22 - -
Cme04g02759 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 462 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01060 Cme-Chr2:15561903 Cme04g02759 Cme-Chr4:32820268 3.03E-47 dispersed
Cme04g02759 Cme-Chr4:32820268 Cme09g00236 Cme-Chr9:1797171 5.73E-81 dispersed
Cme12g01756 Cme-Chr12:24233364 Cme04g02759 Cme-Chr4:32820268 7.10E-25 dispersed
Cme04g02759 Cme-Chr4:32820268 Cme10g00381 Cme-Chr10:2444550 1.04E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41298 PF03106 WRKY 9.60E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02759 K13424 - csv:101205651 854.358