Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02778 ATGAGTTGTAACGAGAAAAATAGAGGGGTAAATGATAGGGAAACTGAGCTCCCAGTTTTGACCAAGCCACATCGGAAACCAGTCATCGAGAATGGATCCATAACGGCCCAACACTTGACCATCGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGCGAGGGCGCTCACGGAAAGGTTTATGAAGGCAGGTACCGGGACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCACTTGAAAGTCGTTTTGCTCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTCACAGAGCTATTACCAGGGATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGTTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTTGACGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCGTATGCGGCTGCTTTCAAGCAAGAGAGACCCAGTATTCCAGGCGACATACCTCCCGAGCTAGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATTCGCATGCTTAATGCTTATCTATTTACTCTCCCGCCTCCTTCACTGTCTTCACCGTCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACTGAGTTCACTTCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTATTTGCTGCTAAGAGGGCTAAGAACTCGCAATAA 1122 44.3 MSCNEKNRGVNDRETELPVLTKPHRKPVIENGSITAQHLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTPEERAALESRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPELAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSLSSPSSPKSDTTETATTSNGAITEFTSRARGKFGFLRQLFAAKRAKNSQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32921716 32925875 + MELO3C009110.2.1 Cme04g02778 327039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02778 373 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02778 373 SUPERFAMILY Protein kinase-like (PK-like) 50 344 IPR011009 -
Cme04g02778 373 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Cme04g02778 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 27 352 - -
Cme04g02778 373 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Cme04g02778 373 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Cme04g02778 373 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Cme04g02778 373 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Cme04g02778 373 MobiDBLite consensus disorder prediction 329 347 - -
Cme04g02778 373 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Cme04g02778 373 Gene3D Transferase(Phosphotransferase) domain 1 135 341 - -
Cme04g02778 373 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02778 373 PANTHER SERINE-THREONINE PROTEIN KINASE 27 352 - -
Cme04g02778 373 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
Cme04g02778 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cme04g02778 373 CDD STKc_MAP3K-like 58 313 - -
Cme04g02778 373 MobiDBLite consensus disorder prediction 325 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00144 Cme-Chr2:1079657 Cme04g02778 Cme-Chr4:32921716 1.40E-06 dispersed
Cme04g02778 Cme-Chr4:32921716 Cme09g00431 Cme-Chr9:4118767 1.50E-135 dispersed
Cme04g02778 Cme-Chr4:32921716 Cme04g01834 Cme-Chr4:26066055 1.24E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64863 PF07714 PK_Tyr_Ser-Thr 4.00E-62 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02778 - - csv:101223101 709.523