Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02789 ATGCTTTTCAAACTATTCCTCATTCTTGTCTTAGCTGCTGCCTGCGTTTCTGCTGTAGACACTGTTTTCAGTGATGACGTTCTAGGATTGATAGTGTTCAAAGCTGGCCTTCAAGATCCCATGGGTAAACTGGTTACATGGAACGAAGACGATGAAACTCCCTGTAACTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAACTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATCGGTCGTGGACTCTTGAGATTGCAATTCCTTCAAATACTTTCACTTGCCAACAACAACTTCACTGGCACAATCAACTCTGCTCTTTCTCACCTTGGAAATTTGCAAGTTATTGACTTGAGTGACAACAATTTATCTGGACCCATTCCCGAACAACTTTTCCAGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAGCCTCATAGGAAATATCCCTCAATCATTAACCTCTTGCTTCTCTCTGGAGGTTCTCAACTTCTCCTCCAACCATCTCTCTGGAACATTGCCTTCTGGGTTATGGTATTTGAGAGAACTCCAGTCTCTGGATTTCTCTGATAACCTGCTTGAGGGGCAAATTCCTAATGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTATCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTGCTTCTGAAATCACTCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCAGAGTCGATGCAGATGCTCAGTTCTTGCACTTACCTGAATTTACGTGGAAATTCTCTCACGGGTGAGGTCCCTCATTGGATTGGGGAACTTAAAAATCTCGACACTTTAGATCTTTCTGCTAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTCTTGAAGAAGTTTAATGTGTCCACAAACTATTTAACTAGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTTTTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTATATGGCTCTTTAAGGCAGCTATTCCAAGTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCTCTTTCAAGGGTCTTCAAGTTTTGGATTTATCTTCAAATATTTTATCTGGTCACATTCCATCTAATGTTGGAGAACTTGGTAACTTGCAGTTGCTTAACATATCTAGAAACCATCTCGTGGGTTCTATTCCAAGGAGCATTGGTGAACTAAAATCAGCATATGCAATTGACTTCAGTGACAATCAATTAAACGGAAGCATTCCTGCTGAAATTGGGGGAGCGATCTCACTCAAGGAGTTAAGGCTGGAGAAGAACTTCCTCACTGGAGAAATCCCAGTCAAGATTGGCAAATGCTCGTTTTTGACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCATTGCAAATCTTTCCAATCTCGTAGATGTAGACTTGTCTTTCAACAAACTATCCGGAAGCCTTCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTTAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGTGGCTTCTTCAACGCCATATCTCCCTTGTCCATATCACATAACCCATCTCTTTGTGGGGCTGTTGTCAATAGGTCATGCCCTTCCGTCCATCCAAAACCGATCGTCCTAAACCCAAATTCTTCTGATGCCAACGGAAATTCCCCATCCCACAACCATCATCATGAAATCATACTAAGCATATCTTCCATTATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTATCTGTCCGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCGGACTATGGAAAGCTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAATAAGGACTGCGAACTTGGTCGAGGTGGATTTGGGGTAGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGGCAGATCAGACATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTGATTTATGAATATGTCCCCAATGGAAGTTTGTATAAGCATCTACACGATAGAACTGGCGACGACTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAATATCATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCCGGGAAACCAAAAGTAGGGGACTATGGGTTGGCAATGTTATTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTAGGATACATGGCTCCGGAGTTTGCCTGCAAGACAGTGACTATAACCGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTCTGGAAGTGGTGACAGGAAAAAGACCCGTTGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTCTGGATGAAGGGACAGTGGAACGATGTGTTGATGAGAGGCTCCAACTGAACTTCCGTGTTGAAGAAGCGATTCCTGTAATGAAACTGGGTTTAATATGCGCATCTCAAGTACCATCTAACAGACCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCTCCCTCTGAAGTTGATGAGGAGTTGGAATGA 2877 42.82 MLFKLFLILVLAAACVSAVDTVFSDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIGRGLLRLQFLQILSLANNNFTGTINSALSHLGNLQVIDLSDNNLSGPIPEQLFQQCGSIRVLSFARNSLIGNIPQSLTSCFSLEVLNFSSNHLSGTLPSGLWYLRELQSLDFSDNLLEGQIPNGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSLDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPHWIGELKNLDTLDLSANNFSGQLPSSIGNLQFLKKFNVSTNYLTRNLPESMANCNNLLSFDASHNHLTGNLPIWLFKAAIPSVPFSSYRLGENLSSPASFKGLQVLDLSSNILSGHIPSNVGELGNLQLLNISRNHLVGSIPRSIGELKSAYAIDFSDNQLNGSIPAEIGGAISLKELRLEKNFLTGEIPVKIGKCSFLTSLILSHNNLTGSIPAAIANLSNLVDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNAISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDANGNSPSHNHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSVREDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDRTGDDCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLAMLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVERCVDERLQLNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32992323 32996925 - MELO3C009100.2.1 Cme04g02789 327050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02789 958 SUPERFAMILY L domain-like 41 352 - -
Cme04g02789 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 949 - -
Cme04g02789 958 Gene3D Phosphorylase Kinase; domain 1 664 751 - -
Cme04g02789 958 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Cme04g02789 958 Pfam Leucine rich repeat 476 534 IPR001611 GO:0005515
Cme04g02789 958 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Cme04g02789 958 Pfam Protein tyrosine and serine/threonine kinase 677 943 IPR001245 GO:0004672|GO:0006468
Cme04g02789 958 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Cme04g02789 958 ProSiteProfiles Protein kinase domain profile. 675 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02789 958 SUPERFAMILY L domain-like 373 560 - -
Cme04g02789 958 Gene3D Transferase(Phosphotransferase) domain 1 752 957 - -
Cme04g02789 958 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Cme04g02789 958 CDD STKc_IRAK 681 947 - -
Cme04g02789 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 949 - -
Cme04g02789 958 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cme04g02789 958 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Cme04g02789 958 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515
Cme04g02789 958 SMART LRR_typ_2 497 520 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 211 235 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 521 545 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 283 307 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 401 425 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 114 138 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 187 210 IPR003591 -
Cme04g02789 958 SMART LRR_typ_2 90 113 IPR003591 -
Cme04g02789 958 SMART LRR_sd22_2 283 309 - -
Cme04g02789 958 SMART LRR_sd22_2 187 210 - -
Cme04g02789 958 SMART LRR_sd22_2 377 400 - -
Cme04g02789 958 SMART LRR_sd22_2 497 523 - -
Cme04g02789 958 Gene3D Ribonuclease Inhibitor 25 178 IPR032675 -
Cme04g02789 958 SUPERFAMILY Protein kinase-like (PK-like) 678 951 IPR011009 -
Cme04g02789 958 Gene3D Ribonuclease Inhibitor 288 570 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02789 Cme-Chr4:32992323 Cme10g01254 Cme-Chr10:13287124 0 dispersed
Cme04g02789 Cme-Chr4:32992323 Cme06g00412 Cme-Chr6:2644766 2.83E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64865 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02789 - - csv:101222148 1781.15