Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g02800 ATGTCTCCTGTGGAAACTCTGCTACTTTTCGCTTTCTTCTACGCTGGACAAGACACAGCCGGTTCTTTTACTGATCCCCGCGATTCTGCTGCGCTGGAATCCTTGCGAAATGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAATTGATCCGTGTGGAACTCCATGGGAAGGAGTCGCTTGCATCAATTCAAGAGTCACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACCGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAATTTGAGTATCTTGATCCTGGCTGGTTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCTAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTTACTGGTACCATACCGCCATCTCTGGGAAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCTGAAACTCCTGGTTTGGACCTCCTTCTGAAGGCTAAACACTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGGTCCGAAATGGTATTAATACACATATTGTTTGATGGAAATAAATTTTCTGGGAATATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGGAATTCCCTGACAGGAACTGTCCCATCAGATCTGAACAACCTAACAAATATCAATGAATTGAACTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTATGTGGACCTTAGTAACAATTCATTTGATTCATCAGAAGCTCCCGAATGGTTCTCAAATCTACAATCTCTCACTACTCTGATCATTGAGTTTGGGTCAATGCGAGGATCTGTTCCACAAGGAGTGTTTAGTTTACCACAAATACAACAAGTGAAACTGAAGAAGAATGCCTTTAGTGACACATTTGATATGGGTGACAAAGTCAGTGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAACATTTCCCATTTTACTCTTGGTTCAAGATATACCAAAACTTTGATGCTTATAGGGAATCCCGTGTGTAGCACTGATGTTACCCTCTCAAATACGAACTACTGCCAAGTTCAAGATCAACCTGTGAAACCCTATTCTACCAGCCTTGCCAGCTGTTTAAGTAAGTCGTGTTCTCCGGATGAGAAGTTAAGTCCTCGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCATTTAGGGAATTGTCCAATGTGACTTTGTTTCATTCATTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACGCCTGGTTCAGTTTCTATTCAAAACCCGTTCTTCAATGTTGACGATTATCTTCAGATGCAACTTGCACTTTTTCCATCCGATGGAGAGTATTTTAACAGGTCAGATATTCAGAGGATTGGATTTGACTTGAGTAATCAAACATACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCTTCTCCCTACGGTTTTGCAGGCACAACTAAGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCGTTCTAGGCCTCATTGGAGTTGGAATATATGCAATTTGGCAAAAGAAACGTGCAGAAAAGGCCATTGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAACGATAGTGGAGGTGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGGGCAATGAGGTAGGATCGGGAGGATATGGCAAGGTGTATAGAGGGATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAGGGTGGCCTTGAGTTTAAGACGGAAATTGAACTGCTTTCACGAGTTCATCACAAAAACCTCCTTGGCCTGGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTCGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTGTCTGGAAAATCTGGTATCAATCTCGATTGGAAGAGAAGACTTCGTATTGCACTTGGATCTGCTAGAGGATTGGCTTACTTACATGAACTTGCCAATCCTCCCATAATCCATAGGGACGTTAAGTCCACCAATATTCTATTGGATGAACATTTAAATGCAAAAGTCGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGATAATGAAAAGGGACACGTTTCTACTCAAGTTAAAGGAACATTGGGTTATTTGGATCCTGAGTATTATATGACTCAACAACTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAACTATTAACAGGTAAGCTTCCTATTGAGAAAGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTGATGAATAAAAGCGAGGAAGAATATTATGGTCTCAAGCAGCTAATGGATGCAACCATTTTAAACAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTCGAGGAGTCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGTATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCATAGGCATCCCTACAATGATTCTATACCAAAAAAGGATGCCCATGACAGCAATTCTTTTGATTACAGTGGTGGATACACTCTTTCGACAAAAGTGGAGCCCAAATAG 2898 42.06 MSPVETLLLFAFFYAGQDTAGSFTDPRDSAALESLRNEWQNTPPSWGASIDPCGTPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQNLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGTIPPSLGKLSNLYWLDLADNQLTGSLPVSTSETPGLDLLLKAKHFHFNKNQLSGSISPKLFRSEMVLIHILFDGNKFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSDLNNLTNINELNLANNKLTGPLPNLTQMSSLNYVDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSMRGSVPQGVFSLPQIQQVKLKKNAFSDTFDMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDVTLSNTNYCQVQDQPVKPYSTSLASCLSKSCSPDEKLSPRCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQLALFPSDGEYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTTKGTSISPGVIIGVAIGCAFLVLGLIGVGIYAIWQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMGNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDEHLNAKVADFGLSKLVSDNEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTGKLPIEKGKYVVREVRMLMNKSEEEYYGLKQLMDATILNNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAHRHPYNDSIPKKDAHDSNSFDYSGGYTLSTKVEPK 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33066024 33075292 + MELO3C009089.2.1 Cme04g02800 327061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g02800 965 ProSiteProfiles Protein kinase domain profile. 630 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02800 965 Gene3D Ribonuclease Inhibitor 285 422 IPR032675 -
Cme04g02800 965 Gene3D Ribonuclease Inhibitor 219 284 IPR032675 -
Cme04g02800 965 Gene3D Transferase(Phosphotransferase) domain 1 706 933 - -
Cme04g02800 965 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Cme04g02800 965 SUPERFAMILY Protein kinase-like (PK-like) 615 914 IPR011009 -
Cme04g02800 965 Pfam Protein tyrosine and serine/threonine kinase 631 900 IPR001245 GO:0004672|GO:0006468
Cme04g02800 965 PANTHER LRR RECEPTOR-LIKE KINASE 1 937 - -
Cme04g02800 965 MobiDBLite consensus disorder prediction 911 926 - -
Cme04g02800 965 SMART serkin_6 630 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g02800 965 Gene3D Phosphorylase Kinase; domain 1 604 705 - -
Cme04g02800 965 MobiDBLite consensus disorder prediction 934 948 - -
Cme04g02800 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Cme04g02800 965 Gene3D Ribonuclease Inhibitor 25 218 IPR032675 -
Cme04g02800 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 937 - -
Cme04g02800 965 CDD STKc_IRAK 636 904 - -
Cme04g02800 965 MobiDBLite consensus disorder prediction 911 965 - -
Cme04g02800 965 SUPERFAMILY L domain-like 31 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02800 Cme-Chr4:33066024 Cme12g00002 Cme-Chr12:55338 1.54E-154 dispersed
Cme02g01149 Cme-Chr2:16463257 Cme04g02800 Cme-Chr4:33066024 7.80E-68 transposed
Cme03g00938 Cme-Chr3:17910950 Cme04g02800 Cme-Chr4:33066024 5.62E-65 transposed
Cme04g01793 Cme-Chr4:25620676 Cme04g02800 Cme-Chr4:33066024 0 transposed
Cme06g00167 Cme-Chr6:1012416 Cme04g02800 Cme-Chr4:33066024 3.70E-45 transposed
Cme10g01081 Cme-Chr10:9496239 Cme04g02800 Cme-Chr4:33066024 1.19E-65 transposed
Cme11g01355 Cme-Chr11:20386821 Cme04g02800 Cme-Chr4:33066024 1.82E-74 transposed
Cme12g01476 Cme-Chr12:22429890 Cme04g02800 Cme-Chr4:33066024 9.48E-06 transposed
Cme04g02800 Cme-Chr4:33066024 Cme08g02076 Cme-Chr8:26158878 1.54E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64866 PF07714 PK_Tyr_Ser-Thr 4.60E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g02800 - - csv:101220026 1828.91